GgaINT0101748 @ galGal3
Intron Retention
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38457485-38458968:-
Coord C1 exon
chr2:38458822-38458968
Coord A exon
chr2:38457589-38458821
Coord C2 exon
chr2:38457485-38457588
Length
1233 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GTTGGGTTTTGTTGTTGTAGGAG
3' ss Score
6.49
Exon sequences
Seq C1 exon
GTTTTCCATGATGTTGCCTATAAAGCTAAAGATAGAAATGATTTATTATCAGGAATTGATGAATTTTTAGACCAAGTGACAGTACTACCTCCAGGAGAATGGGATCCATCTATACGAATTGAACCACCAAAAAGTGTTCCTTCCCAG
Seq A exon
GTAAATAAATAAATAAAATGGAAAAAAAATCTAGCAGGGAGCCCCCATGCATTTTCAAATGCAAGTTAATTGTTCATTGAGTATTAACTTCAGTAAAGTATCAAGAAGGCTGACAACAATTTGTAAGAAAAAAGTAGATCATGAAAAAAGTATTGGATCAGTTTCCTGCTTTGTTTTTAAGAAAATTGTATTTAATCTATTTCCTTTTGAAATAGTGAAATGAGATTCTGAGGTTAAAGAAGTGTTGTAACATTGTGCCTGTGTTCATAGGATACATTTTATTATTAACCTAACAATGATCAGTAAGAATGTTGTAATACTTACACAAACTTTGTGTGTGCACCACTCATTGAAAATTAATGTTAATGTATATCGGCTAACAAATAACGTTTACTGAATGCTTATGCTACAGATAAAGGTAGGTCAAGAGTGATCCCTTGTTCCACAAGGCTTAGAATTGAGAGCAATGGAGAGGTGCTACCTTAGGGAGCTGTGGCTTCTTCCCTTCTTTATTCTCTACAACTGCTGCAGAGATCATAAGTAGAGCAGAAGACTGACGCTCTTGATCCAGAAGGCTGATGCTGGTGTTGAACTGCAATCTGAGGAGTCAGTGGAATGGAGAAGGAGCAGCAGTACAGTTTATTTCATGAGTAGTGCGAGCCTACCACTTGATGTGTTTCCAAAAAAACCCACAAAAACACCCCAAAACAAACAAAGGGTGGGGTATTTTTTAAATTGTTTTTTTTGAATGCAGGATTGGCTAAGAAATATATGAGGAGCTTGTTGAACGGAGGAATGACTTCTCATTTATACTTCACTAAATACTGTATTTGTTATAAACCGAGGTCAGTTTCTGATACTAGCTGGAGGCTACTGCTCTGGAAATGACTGAGGGAAAAACAACAACTTTGATTTCTAGACCACATTGCTGAGCCTTTACTGTGTTTTAAAAAGGCCAACATTGTTTCATCATATCTCAGGGGAGGTAATTGTTGTAGAAAGGGAAGATTTATACCATTGTGCAAGCCACTAATAAGATCTTTTTGGAAGTGTTGTACAGTTCTGGTCATCTGTATTTAATAAATAGTGGGTTTGGCAAATGAAGAACTGATGATCAGCTGGGAATGTGAAAAGGTTTGGAAGATGTGGAGTTTCTCAACACTCTATTTAAACTGTTTTTAGTTCAAAAGCAATCATCTTAAAATGTGTTTGTGTTGGGTTTTGTTGTTGTAG
Seq C2 exon
GAGAAAAGGAAGATACCTAAGTTTCCAAATGGATCTACTCCTACAGGAGAGACTCTCAAAGAAGAAGGTCATCATGCTGGACCTGAACTTGAGAGAACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405:ENSGALT00000018603:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.743
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(13.4=73.5)
A:
NA
C2:
PF0095516=HCO3_cotransp=PU(1.2=17.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCATGATGTTGCCTATAAAGCT
R:
CCAGTTCTCTCAAGTTCAGGTCC
Band lengths:
246-1479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]