RnoINT0138543 @ rn6
Intron Retention
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11866176-11869075:-
Coord C1 exon
chr15:11868929-11869075
Coord A exon
chr15:11866283-11868928
Coord C2 exon
chr15:11866176-11866282
Length
2646 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CATATTTCTGTGAAATTCAGGAG
3' ss Score
4.98
Exon sequences
Seq C1 exon
ATTTTTCATGATGTAGCTTATAAAGCAAAAGATCGAAATGACCTCTTATCTGGAATTGATGAATTTTTAGATCAAGTAACTGTTCTTCCTCCAGGAGAGTGGGATCCTTCCATACGCATAGAGCCACCAAAAAGTGTTCCTTCTCAG
Seq A exon
GTAAGTATCTGGAGAAAGACTGTAGGGGGGCGTTGTTTTCTTTTTTAGTTAAAAACTTTTCATGAAGAAATGTAAGTCATGCATTTTTATGACACACAAGTTACAACTGTTTACAGTTGGACGTGGCTCAGTTGGAACTCTTCTTAGCATTGAATCCTAGCACTGACAGTGAATCAACAGAGATCAGTGGTGGGAGGTCAGAGAGGATGTGCCAGGATCACCATGCCTCTGGTACGACTTCATCCCAAACACTTGTTAGCCGTGTGGTTGTTATGATATTTATTCTGTTACCTGGACATGTGAATATTTAGAATCTACCTGCTACTTTGTTATTTGCATAATTTAAATAGATAATTGCATAATTAAAAAAATTTACATGTGCCATTGCTAGTACATTTGTTTCACAAAAACAAATAACTTTTGGGATACGGGTTCTTGAGCACTTGAAATAGTATGGAATAATTTGTTTCTGCAAGTTTGGGAAATTTCTGGTATATATTTTTGAACTACTTTACTTGCCAAGTGTGGGCTTTAACAAGTTGCTTGTTTCTTTTGTGAAAATTGCCCTAAGTGAACTTTTTGGTTTTTCTTAGGTCAGTTCTGATCAGTTTTGTTTGCCTGGTATTTTACTCATCTTGCCCAGATTTTAGATTTTCTTGAAAAGCTTATTTATCACACTCTTTGATTTGTGGTGTTACATCCTGACATACCTTAAGTTTAGCTAATAGGCTAATTATTTACTATATTTTTTTACAGTAAATTTTTTTGTTTTTAATGTGGATCTTTTTCTATTTCATTTCTGCTTTTAGCTGATTTACTTCACTCCTGTCCTTCAGTAAAGATTTATTTTCTCCTTTTTTGGTATTTTTTGTTAGTTTGCTAGTTTTAGATTTATCTTACTTTATATGTATGAGTATTTTGCTTGACTATATGAAGATGTACCATATGCATGCCCTGGATCAGATAACCCAAATTGGAGTTATGTATACTTGTGAACCATCATGTTAATGGTGGGAATTGAACTCAGATCCTCTGAAGAATAGCCAGTGTTCTTAACTGCTGAGCTATCTCTCCAGCCCCCATCTTTTAAAACTTTTCTAAAAGAAAAATAAAATTTTGTTTTGTTTTGTTTCGAGACAGTGTTTTACCGCACGGCTCTGTGTGCCTGAAACCACCTTTGTGGACCAGGCTACTTAAACTGCTAGTGATCCTCTGCCTTAGTGTCTCAGATTCTAGAATGTAAGCATGAGCCACTGCCTGGTGCTTTATACTTCATGTTGTTTCTGACATTACACAGACTATAATATTTAGCATGTTCTCTTGTTCTGTGATGTGTTCTGTTTCCCCTTTGATCTAATACATTGGTTTTATCTTTGGCATGTTCAAGTGTGATCTTACTTTTCTAATCTTGCTACTCTGTGTTAATATGGTATTGTATGTCTAGGTCCATGGGAGCCTTGGACTTCAGGGGAAAACTACATGCCTTACTGCGTCTCTCTGTTGCTCCCCGCATATTCCGTTTCCTCCCTCTCTTTATTATATGTGCTTATCTGCACATGGATATTCTCTAGCCAGTTTTTGGGTAGCTTGAAATACTCCCTTTGTGTTCACATGGGGGAGAAGGTTCTGTGTCTTAGAAGAGGTTTTATTAATTTTAAAGTGAAATCTAAGAAGATACTGAAGGAATTTTTGTGTTACTTTTCTAAAAAAAAATTTTAGTAAGGGAAAAATGCCCTTGGCTTTCTCTTTCCTTCTTCTGCCATCTGTCTTCTTTTTTGAACTTGTTTTGTAGCCCTGATTGATCTTGAACTCACAGTCTTCCTATTCAGCCTCTTGAGAGGTAGCAGTGTAGGTTTGTGAAAAGGGTGTATCTTTAAAAATTAATGCAAATTTTGTTCTTTGGTGTTAACCATAGTGTTCTAGTACTTTGGTGATAAATTCGTCTCTTTGGCAGAATGTTTATGTTCATAGCTAGGCTGGCTAGTGTTTTCTCAGATTAACACAAGCTTGGGTTATGTCAGAAGAGGGAGCCTTACTTGACAAAGTGCTTCCATAGAGCAAGACTGTAGGACATTTTCTTGCTACTCGATGTGGAAGAGCCTAGCTCGTTGTGGGTAGTGCTGCCTGTAGGCTGGTGGTCTTGGATGGTATAAGAAAGCCATGAGGTGCAAGTTACTAGTGTCCCTCCATGATCTGTGTTCCAGTTCTTGCCTCAGGTTCCTAGTCCTTCCTTCCTTCCTTCCTGAAGGACTGTGATCAGGACAGATTAGCTGAAATAATAAACCCTTTTCTCTCTCAATGTGCTTTTGATCAGGATGTTTTATCACAGCAGTGGAAATTTAATAAAACAGTAGCTATTGCAGAATAGAAATTTGACATGGTTTTATGAATATATCTTATGGTGCATTGATATTAGGATATAGTGAAGAAAGCTAACTGTAGATTTAAAGTATGAACAGGAGATAGAAATTGTTCTAAAGTTATCTCCTTTTTAAATGCTATTGTTTTATAAAGTTATACTAGGAAACTTTTTCCCCCAAAGAGTACTTGGGTAAAATCTTCATGAGATGGAATATTCCCTTTAGCCATCTCAGATACCAGTTTTCTTAAAATTGAATTCTGAAAACATATTTCTGTGAAATTCAG
Seq C2 exon
GAGAAAAGGAAGATTCCTGCGTTTCCCAATGGATCTGCTCCAGTGTCTGCTGACCCTCCTAAGGAGGCTGATCACCACGCTGGGCCTGAGCTGCAGAGGACTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957:ENSRNOT00000008759:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.759
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(13.4=73.5)
A:
NA
C2:
PF0095516=HCO3_cotransp=PU(1.2=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]