GgaINT0101750 @ galGal3
Intron Retention
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38453260-38455996:-
Coord C1 exon
chr2:38455822-38455996
Coord A exon
chr2:38453394-38455821
Coord C2 exon
chr2:38453260-38453393
Length
2428 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
GTTTCTTTTCCCCTGAACAGAGT
3' ss Score
8.56
Exon sequences
Seq C1 exon
GCTTTTTGGTGGTTTGATACTTGACATCCAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGCCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTCCTGGGAGAAGCTACACAAGGCAGAATA
Seq A exon
GTGAGTACAAAAAAAATGGTAGTGGCCAGGCTTTTAGACCTTCAGAGGCAAGTCACTGTGTGCATTTGTCTCGTTTACTTATACTTGTATTTGAAGAATTTACCCACAGCACTTGATTAGCCTGCCCCAAAGCAGATCTTCCCCAAAAGGTAATTGCTGTGGAAAATGTGGGGAACCCATGTGAACAGGAGAAGATGCACAGTGGAGGTAAAAATAAAATTATAAAATTGTTTGTCCTGCCTCATTGGAGAGTATCTTCATGAATTGAGAAAGGGCATTGCCTTCTTTTTGGCTACTTGAATAAAATTAATGAATAGCAGTAAAGGTGCACCATCCCACTAGGCCTACTTTAGGCAAAGTCAGAGGCTCAAGGTGGATAGCCAAGAATATGTATTGGCCTTGAGTAGTAGGCCTATGAGGATGATAATGCCTACGGTGTTACGGTGAGCAGTCAATTCTGTATTTAAACAATGGACAGGATATGTGTTTACTTTTATGAGTGGTATGTTATCAATAAAAATAAAAAAGAGATAAGTTTTAAGAGTGGAAAATACTCTTCACTGAAAGTAACTTGGATATTAACCATAAACTTCTGGTACTGCTACCTTGGCAGTGTGTAACGCCAACACCTTTTTAACCAAAATGTTTGGTTGCACTTCAGGTTTTGGAATGAGGAAAGAGTACTTCTATCAGCAACGTTAATAACTTATAGTTTGTGTTAAACGGCGTGTGAGTAAACTAGTCTGAAGTGTATTTTCTGCTTCTAAATCTATTGCAAAGAAATAAGGCTCTGTCCTTTTGGGGAAAGGAAAGGGTAAATTCAGAAATGTCCCTTTACAAATTTAAAATTATGGTAAAGTTTACAATGCTATAAAATTATTTGTGATACTTAGACCAAATTTTAAACGTGTACTCAATTAAAATTTAGTTAACTTTTATCACTTTCAAGTAATGCTGCTGACTTGAATATTTGTTTATTGATGTATTTCTTCAAGCTGATAGTGCACAGAAAAAATGTAATTTACTTCTGTATTTGTTATTTTTGCCACTGTAAATGTAGGGATGGGTTTTCTTGTGATTATCTAAATGTTGATGTAATTTATGAATGTACCCCATATAATTATGAAAATATTCTCCTTTTAAAGCTTGATTCTTAAATACCTTCTTTCTTTTAGCTATCTGGAATTGTTTGCGGGTTTGTTCCTGCCTTCAGATTCTTGGTGTGCATCATTGAATATAAAACTTAGTTACTGCACACACATGTTCAAGCACTGTAGCTGACACTGTAAGGTACACAGTTTGTGTTTGAAACTTTTTCTCACGTTCCCAGAGGTCATCACCTCCACAGTACTCCTGTCCCTGCCACCTTGATTGACAGCCCCCAGGTTAATGCATTGACTATGCCAAAAGCAGTAGTTGAAAGGCAATAGCTAAATAAGAGATTATATTTTTATATATATTTTTCTAACGTAATGAAAAAAGGATGCACGCTTCTTTGTTTTTAATACCCCCAGTTCAGTAAATGCCTTTGACGTATTTAGATGCTTTTCTGAACTGGGCTTAAGTTTGCATAATTTTTGTTTTCTTAAGTTCTTGTAGTTATAAAATAGCTACATATAAAATGCATGAAAATTCCACAGCAAACCCCACAATTTGTAATGTATTACTTTTCACAGTTCTAAGTGGTATATTTAGTTATTTTACAACAACATCATTTTAGGTTCCAGAAAGCCCTGTCTTTCTCTTGAGGTACATTATAATGTTTCCTGCTAAAACTGAGTATTTTAGTAAAACATGCAAATCAAGTACTAAAATACATATCTTTCTTCAATTAAAAGAAATGCATTACCAGGTGGGACATTGGTTTATAGCTCATCTATCTATGGTGTCATGTATACAAAAACCAGTATTGTTCAGTAATTTCCCCTGCACCACCTTGTCAATTTTTTTTTGTTTTGTTTTGTTGTTTCTTTTTGTAATGCTTGGCTGACTGATGTAGGCTTGGTGCAGCACACTGTGTCATGTTTTAGTACAGGTGTATTGCAATATGTATATATTTACATATATATATATTTTTTACAGAGAGAGAACTTTTTCCATATACTACGTGTTCAGTAATTTTGTCTTTCAATTGGTAGTAGTTGTTGGTATGTTTTTCCTCCTTAGTTAGCAGGACTAGTAACTTGTTCTTATGGTTTTGGATGGCTTTATATTTCTCAAGAGCAAAGCTTTCCAAACCTTTTGTCCTTGGTATCGTTACTGCAAAACAGTGTTAACAGTGTCTCAAACATTAATATTGATTGTAATATTTTTACATCTTGTCTTGTTTTTATGTAAATGCATCTTAAAAATGTATTTATGCAGATGTGGCGCTACGTGCTAACCTGAAAGGCAGTATAGTCAAAGCGGTTTCTTTTCCCCTGAACAG
Seq C2 exon
AGTGCAATAGAATCCCTCTTTGGAGCCTCGTTAACTGGGATTGCCTATTCTCTCTTTGCTGGGCAACCTCTTACTATTTTGGGGAGTACCGGACCAGTTCTAGTATTTGAAAAAATACTATTTAAATTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405:ENSGALT00000018603:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]