RnoINT0138545 @ rn6
Intron Retention
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11860863-11864167:-
Coord C1 exon
chr15:11863993-11864167
Coord A exon
chr15:11860997-11863992
Coord C2 exon
chr15:11860863-11860996
Length
2996 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
TTCATTTCCCCCTTAAACAGAGT
3' ss Score
7.63
Exon sequences
Seq C1 exon
GCTTTTTGGTGGTTTGATACTTGACATCAAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGTCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTGCTTGGAGAAGCTACAGAAGGCAGAATA
Seq A exon
GTGAGTACAAAAGATTGGTAGTGGCCAGGCTCCCAGCTCCTCAGAGGCAAGTGTCTGTATGCATTTGTCTCACTATTCGTGCTTGTATTTGAAGAGTCTCCCCACAGCATTAACCTGTCCCCAAACAGACTTCCCCCAAAGGTAATTGCTGTGGAAAACATGGGGAAGACATTTGAACAGGAGAAGATGCACAGTTGAGGTAAAAATAAACAAACAAACAAACAAAAAAAAACCAAACAGTTTTATCCTACCTTGCTTGGTGAAATGGCTATAAATTGAATAAGACTTCCTTGCCTCCTGGGGGATGTGTGGGTTGTGGGGAGATGCTCTGGGTGGGTCGTGGTGGGAAATTTACCCATGGGGGTTCCCATCCTGTGCCGTTAGTCATCATGGCCCCAGCTGGTGACGAAACTGAGACTGTTCAAAACATCAGAATGTAGCTGTAGAGAAGGTGGGATTTTGAAGTTATGTTTGAAGGTATTAAATCTGTTTGAAAGTTGCCAAAACTTTTATTTGTAATTGGATATGGCCTCCTTTTTTTTTCATGTGAATGTAGAGTCCTGTTTGCTGTACTTGCTGACATTGTGCTAGGGACTGGTTTTTTAATAAAATCTTGAATGGCATATTATGGGGCATGTAAATATATTTTAATGGCACATAAGTGACATGATTTATAATTCTTGATTTCTGAAGTTTTTAAAATAATATTTACTATTTAAAGAAATTTATTTTTATAAGTAAAAGGTAAAAACAGTTAAATCTAAATGACAATAGTTATTCAATTATAAAGACATGTCTTTTAGAACATGAGGTTAAAAACCTAAAAATTGAAAATTTCTAATTCTGAATTTATTTTTAGTTACTTAAATTCCTTTTTATTGTTTCCTTTAATCATTGTTTCAAATATACATGTTTTTAGTTGTTTTATATACTGTCAAAAATAGTGCTTATAACTCTGCCGTACCCTATCGAAATGTGGCTTAGCTGTTACATCTTGGAAATATTGCTGCTTGGCTCCTAGACTGTCACTGCCTATCTTCTACCTTCTGCCCTTTGTCACCATGTGCCTGAGATTGTGTTTGGCACTAGAGTAGGCAGAGAGACAAGTGTAGCAGGGACTGCCTAACTAGAAGAATGGGAGGTGGTAGCCTGTGTTTGCTGCACTGTTGTGAGAACGGAGAGCTGTTGAAATTGAAGCTACAGAAATGGAGAACAGAGGAAGCAATATGAATGTGAAGCGTTTGCTTCCTCTGTTCATTATAGAAATGGCGTTTTAGGGAGCTCATTGTCAGAGGTTATATAGTAGCAGAAGAAAGTCTAAATATTGAACTACTCATGTGCCAAGGAAAGGTGGAAAGTTAGCTGATTTAGAGAGTGGGAGGAGTACATTGGCCCAGCAGATTAGATGGCCAGAGCCCTAGGATGAAGAGGGTGGATGTAAAGCAGTTCTACACTGGGGAAAGGTAGCGTGGGGTCTGCTGTGGCTGTGGAGTGGGCAGAGTTCCTGGTGGTGCTGTCCATATTTTTAACCCACAACTTAGAGAGGGGTCTCTAGTTTGTGCTGACCTGCTTTGGTTGAATTTTGTGATGTTGTTTTCAGTGTTTGCTTTCTCTTTCTGAATTTTACTTAGACATTTTTACCTTTAACTCAAGTTCATCCTAAGTTCAGTTTTAAAATGACCATGTTTTAATAGAAATAAGGATTTATTAATAAGGACTCATGTTTTATAGTGAAACCCTATTTTTCAAAAAGAAAGCGTTCTTTACATTTAACATGTTACTAATAAGGTTGCTTGTTTTTTCATGTTGCCAGTAGTTCAATTATATTTTATTTCATTACTTTGTGATTCTGTTTTGGATGATGGTGTTAGAATTGATGGTGAGAATTGCTATATTTGTGTGATATGCCTCAAGTAACAGACAGGGTTTGAAGGTTCCTGTACAAACTCCAGTGGAGTTCTAATTGCCATCATCTCCACTTAAAAAATAGGAGCTTAGACTGGAACCAAGGTGTCCCAAAGCTGCACTCCAGGCCCTGGCCCCGCAGGCTTCCAGAGCAGCCCTGTTGTTGCCTGCTGTTGTGCTGTCTTTCTGTTGTTTCAGGATCTTTGTTTCTTACTACTTCTTGTCTTGCCTTTACCAATCCTGGGCTTTCTCCCTTCTGGATAGCATACCCCAGTTGGCCTTGATGTTTTAAAATGGTAAATTCTTTTCCTTTTTCTCTGACCTTACCCCTTGTCTAGTGGCATAGTACATTGTCATTGCTTCACCATCTAACTGCATTTGCCAGGCTGTAATGCTGATAGTGAAATCCAGTACTGCTCTACCATACTAAACTCCTCTGAGCTATTGTTGTCCTGTTTTATCTCATTTTGATGGGCTACAAATGACAAAATACTTAACATATTAATTATTTTTGTGAATTTTTTTGCAGTCCCCCCATCTACCTTGTTTATGTTACCTATATCAAATCAATTAAGGCCGTCATTCTAATTTTCAAAAAATATATGGAAAGTTGCTTTTATAGAAAACAGTGAGAAAAGGGTCACATATTTACCTTCTTTTTTAATCATCATATTGAGTAATGTGCTTTTTTATTTTCAGAATAAAAATATACTTATTTCAGTCATATAAAACTAGTAAAAATAACACATGCTTTTCTGCTTGCATAGACATACAAATAAAACAGCACATGTGAAGCTGAGGCCCCATATGTCTCCCTTTGCGCCTTGTGTCTTATTGTATCAAGTCTTGAACTAAGGATGATTGCCAAAAGTTCAATTAAATATGCAAAAAAATAAAAGCAGTTTTTTATGTTCTTAATATATTTGTAATTTTCCATATATATGACTTAATTTTAAAGCACAATACTGTCTTTGCTTTAATTTCTGTAACTACTTGGCCAGTATCCATGTTTTCAGATGTCTTACATATGGTATAGTAAGGTAGAGATAATTTTTTGATGTATTGCTTTTGTTCATTTCCCCCTTAAACAG
Seq C2 exon
AGTGCAATAGAGTCTCTTTTTGGAGCATCATTAACTGGGATTGCCTATTCATTGTTTGCTGGGCAACCTCTAACAATACTGGGGAGCACGGGTCCAGTCCTAGTGTTTGAAAAAATTTTATTTAAATTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957:ENSRNOT00000008759:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]