GgaINT0101755 @ galGal4
Intron Retention
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39030261-39030956:-
Coord C1 exon
chr2:39030843-39030956
Coord A exon
chr2:39030423-39030842
Coord C2 exon
chr2:39030261-39030422
Length
420 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
TATTTGTTTATTTTTTCTAGCCC
3' ss Score
7
Exon sequences
Seq C1 exon
GTGCGTTCTACGATCAGTGACTTTGCAGTATTTCTGACGATTGTAATCATGGTTTTGATTGACTATCTTGTAGGAGTGCCATCTCCTAAGCTTCATGTTCCAGAGAAATTTGAA
Seq A exon
GTAAGAAATAAAGCCTTTTTAGGAAAATGTCTTTTAAATGCTTGCAGCTTCACAGACAATAGAACATTAGTATTAAATAAAAATAGAAATTTAACTTTTTGACTTGCATTGTAGTTTAAGTAATCTCCCCTTTCTGTTCTGAATAGTGTCTCTCCTGACAAAACACCGCTTCGTGCTGTAGTATTACTGAAAAGTATGTAGTCTTTACATGTGCAGAAATCAAGGAATGGAATGGATGTTGTATTTTTTTCCATATCATGTTGATATTTAACAGTTAGTCAGTCTTTAGGTCAAAGACACTGGGGAGGAAAAAAAATCAAGGTTCGTATTTAAGAGACTGTTCACATGTTCACTGCAGGTAATGTTTGTAGCAATGAAATCTATACTTTGTTTTAGTGAATATTTGTTTATTTTTTCTAG
Seq C2 exon
CCCACACATAAGGACCGAGGGTGGTTCATAGACCCTCTTGGAGGCAATCCTTGGTGGACGCTCCTGGTAGCTGCTGTTCCTGCTTTACTCTGTACCATTCTCATTTTCATGGATCAACAAATAACAGCTGTTATTATAAACAGAAAAGAGCATAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405:ENSGALT00000018603:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(7.2=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGTTCTACGATCAGTGACT
R:
AACAGCTGTTATTTGTTGATCCATGA
Band lengths:
246-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]