HsaINT0153483 @ hg19
Intron Retention
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27436445-27439288:-
Coord C1 exon
chr3:27439175-27439288
Coord A exon
chr3:27436607-27439174
Coord C2 exon
chr3:27436445-27436606
Length
2568 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TATATTTAATTTTTTAACAGCCT
3' ss Score
6.51
Exon sequences
Seq C1 exon
GTGCGATCGACAATCAGTGATTTTGCTGTATTTCTCACAATAGTAATAATGGTTACAATTGACTACCTTGTAGGAGTTCCATCTCCTAAACTTCATGTTCCTGAAAAATTTGAG
Seq A exon
GTAAGGATTAAAACAAGTGGCTATTTGTTACTTGGGAATACCACACTACTTTAAAGCAAGATACTATTTTCTCAGTAGTTATTGTTTTAAAAGTATGTAGTCTCTTTGAAGGGCTGATGCTTTGAAAGGAAATAATTTATATGTGTTTTTCATATGTATATAAACAATGACAATATGGACAGAAAAGAGACATGTGAACTTAAAAGTATCACCGCTGGTCCATTAGAGAGAGTGAATGAAAATATTTGTGGTAAGATGTAGGGAGCCATTAAAAAAAAAAAAAAGTCTTTGCTCTCCTACCTGGAGTTCTTGCTGTACCTTCCAGGGAGAAGGAAACAGCCTTTATTTTTTTATAAAGAAGTAACCCAGGCCAGGTGCAGTGGCTTGTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGTAATCCCGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCTGCGACCATGCCATTGCACTCCAGACTGGGCAATAAGAGGGGAACTCCATCTCAAAAAAAAAAAGTAACCTAAAATTCAATTTTCTAGGAGTGGCAGAGAGGGTCTAGTTAAATTTCTAGAAGGGTAGTATATCTGACAGTAGTTGGAAAATTCCATGTAACAATTTCCAGTAGCATAAGGAGAAAACGAAGTGTGTTCTATAAGAAAAATGATCTGAGCATCCATTTGAATTTTCTGCTTTCATTAGCAGATTTGAATATATTCATTTTCCTTCTGCTCTGTTTTTGTTTTCTTCCATCCTCCTTTGCTTATGCTAAAAGGAAAGACATTGTGAATAGTGTCACTGGTTATATTTAATTTAACAAGTTATATGACTTCTTTCAGAAGCAGCTGGTTTAAAGGGGATCCGAAATAAGGAATATAATGAAGATCATTTTATTTTATATTATAAAATCTAATTTTATAATATTGCACTGAGACCAAAATGTTATTTTTAAAATCAGTGGTCTTTAAAGTAGGGTACACAGGTGGAAAATGATCTGCCAACAATTTTTAGAAAGTCTTATGTTTTTAATGTAAAAATATGAAAATATTAAACTTTAGGTTTATTTTATGAGAATATATAAATAAATGAAACTATGAATTAATATTGGTTCAAAACGTGATGTAATTTCCTGTAATCCTGGCCTAAGTTCCTTATTCTGATTCTTAAATATGTCCTTGTTATTTATTTACTGATATGGCTTTCAGGTAATAGGCTGATTTCAAGGGGCATAAAATATACTTGAGGAAGCAAATCAAGGAACTCTTAAGAGTAAATGGCATTGTATAAGTAGAATAAAATATTTTTGTTCATACACAACATTGAGTGTGAGGTAGTTTAATATATATTAGTGTGGAAAGATTGAATTACCTGAACTTTGAAAGTATTAAATTTCCCTTTTATATTGACAAATGTTTTCATGAAGAAGAAACAAGCTTAATACCAAGTTGAGGTAATAAAAACATATGTTTAGGTTTCTATATATGCAGTATTCTCCCAAACATACTAAACTCTCTTGATCTTTAAAAAAAAATTGCTATAAAATCTTACATTGTACTGTCAAAATGTATTAGTATCTCATAAAGTGCCAGATTTTTGTTAGTAGTTCCTTTGGAAATACCATGTATTGTGGACCAGTTCTGATTTAGTACTGACCCTGTCAAAATCACTAAGTCTGCAGGACTAGACTAAAGCAGTTTAGTTTAGGAGTTTAGTGGATAGATTGATTTCACCTTATATGAATTATGCAGGAACATGTGGAAATGACATTCCAGTTTGCTTATCAATTTCTACATAACAAACTTTTGAATAACAGCCCTTTATTTGTTTATAATTCTGTGGCAGTTGAGACTAGGCTTAGCTGGTTTGTGGTCTGCTCTGTGGGGTGCAGTCATCAATGGGGGCAATATGCCTTCATTCATATGTCTGAGGCCTCAGCTCAGATGGATGAAACAGCTGGAATAGTTGCCTGGGGAACCGCCCCCGACACCCACTACCATATAGACTATATTGAGGATAGTCTTATCCTCAAGAAAGCTTATCTAGGCTTACTCGACAGCGTAATAATCTCAGGGTTCAAAGCAGGTTAGAGAAGAAGCTGCAAGGTTCTTTAAGGTTAAGACTTAGAAATCACATAGTGTCACTTTGGCCTTATTCTGTGGGTTAAAGTAAGTCACAGGGTCATCCTGGTTTCAGGGGGGAAGGAGGCAGACTCCACCTCTAGGTGGAAAGATTGACTGAGTCAAATGACAGGAGGTATAGTTATAGGGATAGGAAGAATTACTGTGGCCATCTTTGAAAATAATTCACCATGTAGTTCAAGATTTAAGTTATTTCCCATTCGTTGGGTATTTCTTGGAACAGATCAAGTCTATGTTATGGAAATTTAGTGCAATACAGCAAGGAGACTTTTTGAAAATTATATTTAATTTTTTAACAG
Seq C2 exon
CCTACTCATCCAGAGAGAGGGTGGATCATAAGCCCACTGGGAGATAATCCTTGGTGGACCTTATTAATAGCTGCTATTCCTGCTTTGCTTTGTACCATTCTCATCTTTATGGATCAACAAATCACAGCTGTAATTATAAACAGAAAGGAACACAAATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-SLC4A7:NM_003615:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(7.2=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)