GgaINT0101920 @ galGal3
Intron Retention
Gene
ENSGALG00000016207 | ZFAT
Description
NA
Coordinates
chr2:148258695-148262847:-
Coord C1 exon
chr2:148262674-148262847
Coord A exon
chr2:148258784-148262673
Coord C2 exon
chr2:148258695-148258783
Length
3890 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
CCATTTTCTACCTGTTTCAGGAA
3' ss Score
9.97
Exon sequences
Seq C1 exon
GTGTCAAACCCTTCAAATGTTCTCTCTGTGAGTATGCCACTCGCAGCAAGAGTAACTTGAAAGCGCATATGAATCGTCACAGCACTGAGAAAACACACCTTTGTGATATGTGTGGGAAAAAGTTCAAATCAAAAAGCACTTTGAAGAGCCATAAACTCCTTCATACTGCTGATG
Seq A exon
GTAAGCGCACGTTTATTAAATCCAAGTTTGTTTTAGGGCAGGAACTGCTGTCTGTAATATAGTGCTATATTAACAACCTTTCTTTCATTTGAGCACTGAACACTACTTACAAAGTTTATTTTTTCCCAGGAGATATTTCTGTTTATATAATAATTCAAAAACTTTTCAAAATTAACTTCTGTGGAAGACAGTTGTCCCTGGAATAATTGTTTTTTCTGATCTTGTATTATGATCACTTCCTTCTGTATACTTTCAGAGTACTTCTGATCTCAACAGAAGTTTGAAAATACAGATAATTCCTTTGTTATCTGCTTTCCTCTGTGAGAATATTAAAATTGCCAAATCCAGTAGCCCAGTAGAGGCAAATTACTGCACCCCTATGTCCCCAGTTATCCTAAGTGGTATGCATGGGTATGTATTCCCAATAGGCACATGTGCAGGAACACTTGCTCAGTAATTTTAATATTTCTGTTATTAATGACAGAAAAAAAAATAGATGTAGATCAAGATAAAAATATTCTAACTTCTTTCAAAATTTGGGATGCAACAATACTTTATTCCCCTGTCGTTTTCAAAGCATGATAAGCATTTATAAGTTGTGCTGACCTTAGTAGCATGGTCTTTGTTACTCGTGCAACCTTGTGTAGCATAATACCACTCTTTATTGACTATTTCATTTAAATCATTTTTTCTTGAAATTTTTGCCTGTTCACTAGCATTGCCTTTGCACATAAACACACAGGTTCCTTATTATATTTCGATACTCTCTTATTTTTGTGTCTGCTCTTTTCAGTGTATGTGTCACTAACAGAAGGGATGTTCCCTTTCACATTGGTATGATATGTATTATAGGAAACGTGTAGAATTGCCAACTCAGTAAATCATTCCTTATTTGAAAGGTACTTTCCAGTGTTTTCAAATAACTTGATCAATAACATACAGGTGCTGAACAAATGTATGAATTACATATGCAGAAATGAGCAATTTCACTTATCAAATCATTTGCTGATACCTGGCAGTGGGAGAGAGCAGGTTGTATTTGAATTGAAAGAAAATTTGAAACATAATTAGAATATGAAGCTTAAAAAAAACATCTTCCTATGGTGCAATTAATGTCTCCTGCATGGGGACTGATAGAAACATGGTTTTCTGGGAAATTCCCATTACCTTTGGAAAGATGCATGCTGCCACTGGGGTGACAGATTTCGCTGTCTGTAGATAGTGAGTGACTATAGTCTTATTCCTCACAAAGCTCACTTCAGTAAACTCTTCATATATTTCCAACAATCATTAAAATAAAGATAACGTTTGTCATCAAGAATGTTCTGTATAATTTGTCAAGGGACTCAAAACCTCTTGGATGCTGCTGGTTTCTCTTTGCTGAATGTCTCCTCCTACACTGACAGCACTTCAAAACTTCTCACTAGCACATAGCTGGTGTTTTTCAATTATTTCACAAACAAATGAATTTGAAAGATGCTTCTGCTCTTTGAGTCTTGTCTTCCTGACTTACGAATCTAGGCAATTTTTGTTCAAATATCAGCCTTGCAAGGTCAATTTAGCCAGTGGAATATAAAGTAGTTTTCTGTCTGTTTTATTCCACTCGAGGGTGACATGATAGAAAACAACTCTGCAGCCCAGACTTATTACTAGTTGTGATTAGAAATAAATCAGAAAAGCTGTTTTTCATTATTTAATTAGATATCAGAAATTGTAACACGATTTTTCTTAGATTTGTTTTATGGAAGCTTTCACACTTGTTAAAAATACTTGCAATTGTTTGAGTGAGATTCAGAATTTAAAGAAACCTAGTTTCTTCGAGACCATGCTTATTCACCCTTCTTCCTATTGCTTCTTTTGCTTTTTGACTAGCTTTAACACACACTTACACTACTTTGATCAGATATAGTCGGCCAACCATGGGCATTTAATTAAGAAACGCAGTCTTTCTACATGTAATACATAGCAAGACTGGTAACAATCAAAATATATAGAGAAAGGGAGTTTGAAAGCAAGACAAAAAATGTAGACAAGGTATTTTATTTTTAAATCATAAAGGAGAAAAGATTTGGGAGAGAAAATGCTTTAAAAGATGCACAAAGGGAAGTACTGCATGGTTTGAGAGCTTCCCTTTTTATGGAGCTACAAACAGCAACAAATGTTCTTGAAAATATCATAGAGAATTAATTCCTGCTAAAGTAATGGTTTCAAGGCCAAAAGTAGGCTATTATGACCACAGAGTCTGATATCTTGCAGAATACAGACTGTAATTTAATAATTCTACATCATTTTTCAGATAGATTGTGTAGTACATCTTTTTAGATGTATTATGTCTAAGCAGACTTGATTTAAAGACTTCATGTGACAGGGCATCTATCTGATTTTTGAGTAAATGATCTTAAATATTAGTCATGCCCTCTGTTAAAAATGTTGACTTGTAGACTGAATGTTCTACCTTTCAGCTTCAGTAGTTGCAATTCCATTTCTTATTCTTCTGTTTTGTTACTGCTATTTCAGGTTTAGTATCTGCAGCATTGAGACCTGACTTGGAAACTTGTAGGCATGTAAGAAAAAATTCAAATTTGCTATGAATACAACATAATCTTTTAGCCTTCTCTACAGAACTTAAAGAAGCACCTTTCTTTGGATAACACATCTGTACTGAATTAATGTTGCTGGTTTGTTGCGTTTTTTTTGTGCTTTTTTTTTTTTTTCACAAAGCAATCTCTAGAAATTGTATGACTGTACTGACAATCAGACTTTCAGTCTGTGAAGTACTTGAGAAACAGTGTGTCTCAAATCTTTCAGTGACTTTTTGCCTTGTATCTGTGAGAACAAAGTTTGTGCAAATATGCTCCAATTGTCTTCATATCCTATTGCCGATTAGATGTTCCAAAGTTATTTTAACCCCATACATTTTGAGAAAATGTGTTCCCTTTTAAAATAAAGAAATACAAATCAGCACTACAAGGACAGATGACAGAACTTTCCCATTCTCCGTTCTATTTGGCAGTCGCCAGACAGTGCACAGGAGGTGTGAGCTAATCCCAGTTTGTGCTCTCTCTTGCCTTGTAGGACTCTATGTGAGTCTGAGGGTTACTGCAGAGATTTAGATGAGAAAAGACAAAAACTCATAATGAACAAGGCAAGGAGGCATCATGCTCTCTGCTGCAATCTATGCCCATTGTTTTTAAAACTGTGTAAGTGAAAGTGAAAGATGGGAACACAAGGCTCTATTATTTGCCATTTTAATCCTATTTCATTCTATGACCAATTTTATTTCTCCCTGTGTCCTGGGTTAAGCCTTCATAGAAATCTTCTTAAGGTACTTTGAGTCATTATTGGAAGAGTAGAGCAAAATTTGTTGAAGAAATCTTGTGGTAAAAATAATAGGTCATGTCATGCTGTACCAGAAATATATCAAGAAAGCATGCAGGGAAAACCAAGAAAATTTAAATGTATTTGAATTTTAAGAACTCATTACTGGGGACAGAAGTAGAGTAAACCCATGCGACCATGACCAAACATCAGTATTTTAAAGATGTACAAGTCTGCTTTATGAATAGCAAAGTAAAGGTGCCTGTAGCAGTATATTCTTGATTCCCTTCTTCTATTCAGACTCTGCTATAGTGATTTTTTCTCTTTTTCACCAAAAGTCTATCCCAAGAGAACCTAGAGAAATAGTTAACCCTTGTATTTTAAAGATGACACTCAAGCCTTTTTTTCTTCCTTACTGCTCTTCAGTCTATTTAACCAAATTTTGAAGAACAGGTGGTAAACTGAGTATTGTTCATTATTATAATTTTGGAAATTATAATGATGAAGAAATATTACCAGTAGTTTTCAGAACGTCAATAGAAAATAGTGATTCCATTTTCTACCTGTTTCAG
Seq C2 exon
GAAAGCAGTTTAAATGTACAGTATGTGACTATACAGCTGCTCAAAAGCCACAACTCCTACGTCATATGGAACAACATGTCTCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016207:ENSGALT00000026126:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=25.4),PF134651=zf-H2C2_2=WD(100=44.1)
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=76.7)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]