GgaINT0102139 @ galGal4
Intron Retention
Gene
ENSGALG00000005763 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr2:4587757-4588843:+
Coord C1 exon
chr2:4587757-4587901
Coord A exon
chr2:4587902-4588654
Coord C2 exon
chr2:4588655-4588843
Length
753 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
AACACATTCTCCCATTGCAGATT
3' ss Score
10.27
Exon sequences
Seq C1 exon
GTTTCAAGAGCAGATCACACACTACCAACCTCGCCTCTTCGAGTGCTCCAACCAGACGGGTCGGTTCATCATGACAGAGGTGGTGGATTTCTGCCAGGAAGACTTGGATGAAGATGATGTCATGTTACTAGACACTTGGGAAGAG
Seq A exon
GTCAGTTCAGACTCCACTTTCCCTACTTTCCAGACATATTTTCAAACAGGTTCTGGCTTAGTTCAGCAGAATCCATCACTGAGCATGACACTGAGGGCAGAATGCCTGGCTCCCCTTTCTCAGTGGTAGCTGAGAGCTCCCTGTGCTCAGATCTGGAAGTCCAATGGGAATTATCTGCATGATAGACTGTTCATGCTCTAGAGAGGAGGCAGCAGCCAGGATTCTCCTTGCAGACAACTGGTGACCCCTTAATTCACCCTCACCTGTGCAAGGGTTGACCTGGATGAAGTTTGCCTTTGCCATCCCACCACAGGAGGAGGATGGGCAGGTGCTTCAGGAGGACACTGAGTCCATGCCCTGCCCCTAGGCAAGATGAGCTGTGCCTGCATCCATCTTTGTGGGCTCACACAAGGGGGTGGCACCCAGAACACGTGCTCATATCCCAGTACCGATGGTGAGGACTTGCTCTTGGTAAGGGGCTCTGAGGACATTGGAGTTTTTGACCATGCAAGTACTGGGTTTAACTACCTGGAAACATTTGAGAGCTGCTTCCTGAAACATTTGTGATTTGTGCCTGTCTCAAAATTAAAATCTCTCTCGGCTGGGAGTAAATCTGAGATGAAAATCCCAGGGGGCTATTGGCAAACAAGAGTTGCAGCCTTCACTCCAATTCACTTGTCACGAGAGAACAAACAGCTGTGTCTGCACAGGTCCTGCCTGCTCACTGACCTTCAACACATTCTCCCATTGCAG
Seq C2 exon
ATTTTCCTCTGGGTTGGCAAAGCCTCCAACACATATGAGAGGAATGAGGCGGTTGCCTCGGCTAAGGAGTATCTCAAGACCCATCCAGCAGGGAGAGACTTGGCAACTCCGATCATACTGGTGAAGCAGGGCTGTGAGCCCCTCAACTTCACAGGGTGGTTCAACGCTTGGGACCCCTACAAATGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763:ENSGALT00000009258:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
NA
C2:
PF0062617=Gelsolin=PD(63.3=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCAAGAGCAGATCACACACT
R:
ACTCCATTTGTAGGGGTCCCA
Band lengths:
334-1087
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]