DreINT0022377 @ danRer10
Intron Retention
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20279165-20280835:-
Coord C1 exon
chr24:20280691-20280835
Coord A exon
chr24:20279354-20280690
Coord C2 exon
chr24:20279165-20279353
Length
1337 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
ATCTCCTCCTCCTCCCTCAGATT
3' ss Score
11.04
Exon sequences
Seq C1 exon
ACTGGAGGAAGAGGTGTCACTTCATGAGCCCCGTCTGTTCGAGTGCTCCAATCAGACAGGTCGATTCCTCATGACAGAAGTGGCCGACTTTACTCAGGATGACCTGGATGAGGACGACGTCATGCTGCTCGACACCTGGGATGAG
Seq A exon
GTGTGTTTCAGCAGATTAGCACTGTTTGAATGCGGCTGTGGACAAATGGTGGTTTCTTTCAGGGTTATGCAGGGTTATTTCAGGGTTTTATGAGGAAACTTGTTTATGAAACAGAAGAAAAAAAGAGAGAAAATTATAGTTTGAGTTAGTTTGACACCAAATTTTGATTTATTCTTACAAATTGTGATATGACTTTTGCTCTCCGAATAGAAGATGTTATCTCAGAGATATAAGAAATATAGCTGTAAATTCAAGATGGATTCTTGACTCGTAATTGAGAGAGGTAAAGATGCGGTCCTGAGAAAAAAAGATGTGAAATGAAAGTCACAATGGCGGGGAAAAACACACGAAATAAAATTATATTTGCTTACTGTATCGTGAGTTGCATCTTAGAGTAATTATTTTCTAAATACCTTGTTTTATTTATTCTGTTTTCATAAAAAATATTTTGGAAAAGTTTTGGCAATTTTTTTTCTTATTTTTTCCTTATTGTTTTCTGTGCGTGTGTGTGTTCGAGTGTGCATGTCTGTCCATGTACTGTATGTTTGTTTGTATGTTTGTTTTTTTGTTTGTTTATTTGTTTTAAATATGTCTGTATACTTTTATTTACTCTATGTTTCAGTTTTTATTTTAGTTTGAGTCATTTTAGGTTCAACAAAATCAAAATAAGAAATATTTTCTTGATAAGGCACTGAAATAAAATAACTTAATTTAATAAATACATATTTTTAAAAAATCATGCCAACATTTACTTTAAATTATTGATGTATTTTTTATTCATTCATTCATTTTCTTTTTGGCTTAGTCCCTTTATAAATCTGGGGTAGCCATAGTGGAATGAACTGCCAACTCATCCAGCATATGTTTTACGCAGCAGATGCTCTTCCAGCTGCATCCCATTACTGGAAAACCTCCATACACACTCATACACTATGGACAATTTAGCTTACGTAATTCACCTGTACCACATGTCTTTGGAAATCCAAACACAGGCAAAATGCAAACTCCACACAGAAACGTTGTTGTGAAGCGAACGTGCCACCCACTGCACCCATCGTGCAGCCCATGTAGTTTTTGGTTTAAGAGAACCATAATAACCCAGTTTGAAAATGCTTACATTTCATTCTAATAATAACATTTGTACATGTACTATTCTCTTTCTTTCTCAGTTGAGTATATTACAATACACAATTGCTTGTTAATAAAACTAGTCTAATTTCTTAATAAATATCTTTTATATATGATAAACATATTGCTGGTGTTCGTTGTCAGAACTGGACGTTTGTGGCTCATATTTAAATCAGTTTTTTAAACGTCATCTCCTCCTCCTCCCTCAG
Seq C2 exon
ATTTTTCTCTGGATTGGTAACTCGGCAAACCAGTATGAGATCCAGGAGTCCAGCAGCAGTGCAGTAGAGTATCTGAAGACTCATCCGGCAGGACGGGACGCCGGGACCCCCATCACCACTGTTAAACAAGGCTACGAGCCGCCAACCTTCACCGGCTGGTTCAACGCCTGGGACGCGCACAAGTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909:ENSDART00000048940:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.317
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
NA
C2:
PF0062617=Gelsolin=PD(63.3=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGAAGAGGTGTCACT
R:
GCTCCACTTGTGCGCGTC
Band lengths:
334-1671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]