MmuINT0172945 @ mm9
Intron Retention
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:118977430-118979467:+
Coord C1 exon
chr9:118977430-118977574
Coord A exon
chr9:118977575-118979395
Coord C2 exon
chr9:118979396-118979467
Length
1821 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
AGTCCAACTCTTGACCCCAGAAC
3' ss Score
4.17
Exon sequences
Seq C1 exon
GCTTCCCGAGGAGGTGTGGAGCATCCAGCCCCGACTGTTCGAGTGCTCCAGTCACGCAGGCTGCCTGGTCCTCACGGAAGTGCTGTTCTTTGGCCAAGAGGACTTGGACAAGTATGACATCATGTTACTAGACACCTGTCAGGAG
Seq A exon
GTAAAGTGGCCACTCCTGTTTGGCTGGGCTGGGAACTCAGGGTGTGCATCAGTGTGGTTGGGCGTGAAGGAGAGTCTAGCCTGTGACTGATTGTTGCCGTGGACTCAGAGTCCGGGTGTAATAGAGTCAGGTTGTATGTGGTTGTGACCGTGCGTGTTGTGTGTAATGCTGTGTGCCCCATGATGCTGTGTGTGACTGAGGCTCTGCCTAGCTACACGGCACCGCAGGATGTGGAGGGTCTGACTGGGTAGCACAGGGGACTCTTTGAACCTGCACATTTGGGTAGCTACGGCTGTGGGTAACCAGACCATGCAAGCAGTTGTGCAGTCCAGTATAGTCCAGTACGAACAAGAACTGGCCACACCAGTTGTAACTGTGTGTGCACGTGTCTGTGTGAGAGGAAAAGGGGGAACATGGGGTTGGTTGTTGGTGTGACAGAGCAACTGCATTTGTGAGTCTGTAGAATTCTGTGAGCCCATGAGATGGTATACACGACCAGCCAGAAATTGTTACGTGACAGGTAACAAGATGTGACGTGTCTATGTGCACACATTAGATGACAGTAACTGGCTGTGGTCAGCTATCTGGCTCTATGGCAACGGGCAAAGTGTCTCTGCAGCTGCGATACCGTGCGCATGTCATTGTGTGTGGTAGCGTGTGCGTGTGTATGTGAGTGTGTGCGTGGTCGTGTGTGACTGTGTATGCTACTGTCTCTGTTGGGATAAGGTTGAGCCCTGAGGACATCTCAGAGGAAACCCAAGCCCAGACTCCACCCCCTCTCCCCCACTGCACAGCCCACCACATTGCCCAGTCAGCCCCTCTCTGACCAATCATCTCCCCTGACTCCACCCCCTTAGCCCAGAATGGCCTCAAACTAACTATGTAACCCTGAACTTCTGATCTGAGTCCATCTCCCAAGTGCTGGGAATACAGACCTAGCCCACCCCCTCCTGTTTACGTGGTACTTGGGGTCTAGGGCTTTGCTAAGCAAGCACTTGAACTGAATAGTAGCCCCCACCCCTTTTTGAGGCAGAGAATCACACTGTGCAGGCTAACCTCAAACTCTCTCTGTAGCCAAGGATTGCCTTGAACTGACTCTCCTGCCTCCACTTTGCCCGTGCCATCTGTCATTAAAGACATGTGCCACAATACCTGGCTTAGGGACTGAAGCCTGTGTTCTTTCTACCGTTGAGTCTTTAGTACCAAGCCCACCCTAGTGATTCATACCTATTTATAGATTAGATACATGCAGGCATGCATGCATGCCTGTGACCTCAAGTGTTCATGGGTGTACGGACACCGTAACGTGTTGGGTTCTTGGCCATGCATATGCATGCGGGCTTCTGAAGCCATCTGAGTTGGGAGGAGGTGGCTGTCACAAGCAGTCCCTCCACCTGTCCAAGCCCAGGCCTCCTCTGTGGCCCAGATCTTCCTGTGGCTTGGGGAAGCTGCAGGTGAATGGAAGAAAGAAGCAGTGGCCTGGGGCCTTGAGTACCTGAGGACTCACCCAGCAGAGAGGAGCCTGGCCACACCCATCTTTGTGGTCAAGCAAGGCCATGAGCCAGCCACCTTTACCGGGTGGTTTGTCACCTGGGACCCTTACAAGTGGATGGTGAGACGTGATGCCCCACCTCTGCTTAATCTGGTGTGTATGTGGGGGTGGGGGTGGCAGTGACACTGGAAGAGGCCTCTCCTTGGGCAAGGACCTCCTGTGAGTCAGGGGGAGGGGAACCTGATCTTGGGCTTTAGGCTCCTTCCTGGGTTTCAGGGGAGCTCCTTCCTTTACCCCAGTCCTGATAATAGTCCAACTCTTGACCCCAG
Seq C2 exon
AACAGCCAGTCCTACGAGGAGATGGTGGGGAACAGCCTGGGACCGGGATCTGCAATCTCTGAGATGACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775-Vill:NM_011700:16
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(32.9=51.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCGAGGAGGTGTGGAG
R:
TGCTGTCATCTCAGAGATTGCA
Band lengths:
216-2037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: