GgaINT0102140 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:4517549-4519674:+
Coord C1 exon
chr2:4517549-4517737
Coord A exon
chr2:4517738-4519605
Coord C2 exon
chr2:4519606-4519674
Length
1868 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
ACGACTCTCTTTACTTTCAGGAT
3' ss Score
10.93
Exon sequences
Seq C1 exon
ATTTTCCTCTGGGTTGGCAAAGCCTCCAACACATATGAGAGGAATGAGGCGGTTGCCTCGGCTAAGGAGTATCTCAAGACCCATCCAGCAGGGAGAGACTTGGCAACTCCGATCATACTGGTGAAGCAGGGCTGTGAGCCCCTCAACTTCACAGGGTGGTTCAACGCTTGGGACCCCTACAAATGGAGT
Seq A exon
GTAAGTTGCTGGAAAAGCCCTGGGGTGTGCATGTGTGCTCAGCAGTGCTTAAAGGGTGTCACTGTGAATGAGCCATATCCTATGTGGTGCATGGAGCAAAACATCTCTAACGACATAGAATCATGGGTTGGAATCATGAGTCATAAAATGGAGTCATGACATAGAATCATGGGTCTTGGGTTGGAAGGTACCTTAAAGCCCACCCAGTTCCAGCCCCTGCTGTGGGCTGGGTGGCCCCCTTCCATATTAGGCTGCCCAGTGCCCCATCCAACCTGGCCTTGAGGACCTCCAGGGATGGAACATGTACAGTTTCTCTGTCCTGAGCTTCACACCTCAGCAGAAAATACCTGTTCAGTGAAATGGGCTCTTGCAAATAGAAATACATGTGCTTAAATTCACAACACCTGTATTTTTATTTTAAGGAGTTTAGGTTACAAACTAGGTTTGTGATTTCAGCCAACAATACATTTTGGGGTTGCTAATAGTAAAATCAAGTTCAGAGTGGAAACAAAATGTTCCACATCATGAAAGCAATTGAAAAAAAAAAAAAGTGCCCATTTTTCAAAATACAGAAGAAAAATATCTGTCCCATCTATAAGGGCAAACTGAAACCTAAGATGTGAGCAGGTGCATCTTGTCTCCTGGTTCACAAACAGCCCATGAGAGACCTTTGGTCCCTGTGTACAACCCTTCCTCTCGAAAGCTGATTTACAAACACAGAAATGGAAACCTGGAGGAGCTTCAGTGATTAACAGACCTGAAATATCACATGGTTTAGTGGGCATAGTGGTGATGGGTTGGTGCTTGGACTAGATGACCTTAGAGGTCTTTTCCAACCGTAATGATTCTGTGATTCCATGATTCAAGGCAAATGCAATCCTGCCAGGCTCTGCACCCAAATTCCTGCCACCCGATGGCACTGGTGTGCACAGTTTAGGGAAGGATAAGTTACTCTGAATTGGTGTTTTCCAAAATCCTTCCGTGGTGGGCTGGCAGTGGTTGTCCCTTCTCTGTACGGCATTTTGCATGAACATCAGTGTTCAGCTGCTTCACGGGCAGCCTCATCTTCTGGTTACCCAAAGGGCTGTGGATAAGTCCCACACTGGAGCAGGGCAATGGGGTGGAGGTGCCAAGGCAGTCTCATACAAAGACATGTTTCTCCCGCAGCTGAATTTGCATCATCCTTCTTTGCAGTCAGTGGGGTGGCAGAAATTCTGCCTTAACAGCTGGGTTTGGACAGATGATTCCCAGAGCGCCGACCCTTAAAACAATGTTGATGCTTAGAAATGAGGTCAAAACTTGATATTTTTTTTTCTTCTGGGGAACTACTGAAAAACAAGGAGGCAGCTTACAGAATACATGCCTCTATAAGTATCTCCCATAGGCAGCTTTAGCAGCTACAGACAAGCAATCCAAACTGCGAACATCCCAGAAACATGTGGGGCGTGTGTTCATTGCTCCATTTGGGGTCTAAATCTGTTTGTTCTGCAGTGCATATGTTTGTGTTGTTCACTCTAGTTGGGGATCTCTGCTGGATGGTGCTGTTAAGAACTGACATCTCCTGGCTGCTTCGGAAAGCACAGTCATCCACTTGCCAATGTATATAGCATGTTCCTTTTTGTGGATATAAGAGAAACCTGGTCACACACAGCACTAAAATTTAGGTGTTTTTTAATATCAGCTGTTATTCATCTGTTTCTTTGTTTTCAAGTGACAGCTTGGAGTCTCTCCATTCCGGGATTGGGGATTAAAGGAGACCCCAACTGCCACCTCTGTGGTCAGCACTGGGTGATCTGCTGAGCCCAGAGACCAGGAGCACATGCTACCTAACACTGACCTGTGCTTCTCACGACTCTCTTTACTTTCAG
Seq C2 exon
GATGGCAAATCCTATGAGGAGATGAAGAACAGCTTAGGAGATGTGTCGGCTCTATCTGAGATCACGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763:ENSGALT00000009258:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NA
C2:
PF062807=DUF1034=PU(13.1=56.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTCTGGGTTGGCAAAGC
R:
CCGTGATCTCAGATAGAGCCGA
Band lengths:
254-2122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]