GgaINT0102140 @ galGal4
Intron Retention
Gene
ENSGALG00000005763 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr2:4588655-4590780:+
Coord C1 exon
chr2:4588655-4588843
Coord A exon
chr2:4588844-4590711
Coord C2 exon
chr2:4590712-4590780
Length
1868 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
ACGACTCTCTTTACTTTCAGGAT
3' ss Score
10.93
Exon sequences
Seq C1 exon
ATTTTCCTCTGGGTTGGCAAAGCCTCCAACACATATGAGAGGAATGAGGCGGTTGCCTCGGCTAAGGAGTATCTCAAGACCCATCCAGCAGGGAGAGACTTGGCAACTCCGATCATACTGGTGAAGCAGGGCTGTGAGCCCCTCAACTTCACAGGGTGGTTCAACGCTTGGGACCCCTACAAATGGAGT
Seq A exon
GTAAGTTGCTGGAAAAGCCCTGGGGTGTGCATGTGTGCTCAGCAGTGCTTAAAGGGTGTCACTGTGAATGAGCCATATCCTATGTGGTGCATGGAGCAAAACATCTCTAACGACATAGAATCATGGGTTGGAATCATGAGTCATAAAATGGAGTCATGACATAGAATCATGGGTCTTGGGTTGGAAGGTACCTTAAAGCCCACCCAGTTCCAGCCCCTGCTGTGGGCTGGGTGGCCCCCTTCCATATTAGGCTGCCCAGTGCCCCATCCAACCTGGCCTTGAGGACCTCCAGGGATGGAACATGTACAGTTTCTCTGTCCTGAGCTTCACACCTCAGCAGAAAATACCTGTTCAGTGAAATGGGCTCTTGCAAATAGAAATACATGTGCTTAAATTCACAACACCTGTATTTTTATTTTAAGGAGTTTAGGTTACAAACTAGGTTTGTGATTTCAGCCAACAATACATTTTGGGGTTGCTAATAGTAAAATCAAGTTCAGAGTGGAAACAAAATGTTCCACATCATGAAAGCAATTGAAAAAAAAAAAAAGTGCCCATTTTTCAAAATACAGAAGAAAAATATCTGTCCCATCTATAAGGGCAAACTGAAACCTAAGATGTGAGCAGGTGCATCTTGTCTCCTGGTTCACAAACAGCCCATGAGAGACCTTTGGTCCCTGTGTACAACCCTTCCTCTCGAAAGCTGATTTACAAACACAGAAATGGAAACCTGGAGGAGCTTCAGTGATTAACAGACCTGAAATATCACATGGTTTAGTGGGCATAGTGGTGATGGGTTGGTGCTTGGACTAGATGACCTTAGAGGTCTTTTCCAACCGTAATGATTCTGTGATTCCATGATTCAAGGCAAATGCAATCCTGCCAGGCTCTGCACCCAAATTCCTGCCACCCGATGGCACTGGTGTGCACAGTTTAGGGAAGGATAAGTTACTCTGAATTGGTGTTTTCCAAAATCCTTCCGTGGTGGGCTGGCAGTGGTTGTCCCTTCTCTGTACGGCATTTTGCATGAACATCAGTGTTCAGCTGCTTCACGGGCAGCCTCATCTTCTGGTTACCCAAAGGGCTGTGGATAAGTCCCACACTGGAGCAGGGCAATGGGGTGGAGGTGCCAAGGCAGTCTCATACAAAGACATGTTTCTCCCGCAGCTGAATTTGCATCATCCTTCTTTGCAGTCAGTGGGGTGGCAGAAATTCTGCCTTAACAGCTGGGTTTGGACAGATGATTCCCAGAGCGCCGACCCTTAAAACAATGTTGATGCTTAGAAATGAGGTCAAAACTTGATATTTTTTTTTCTTCTGGGGAACTACTGAAAAACAAGGAGGCAGCTTACAGAATACATGCCTCTATAAGTATCTCCCATAGGCAGCTTTAGCAGCTACAGACAAGCAATCCAAACTGCGAACATCCCAGAAACATGTGGGGCGTGTGTTCATTGCTCCATTTGGGGTCTAAATCTGTTTGTTCTGCAGTGCATATGTTTGTGTTGTTCACTCTAGTTGGGGATCTCTGCTGGATGGTGCTGTTAAGAACTGACATCTCCTGGCTGCTTCGGAAAGCACAGTCATCCACTTGCCAATGTATATAGCATGTTCCTTTTTGTGGATATAAGAGAAACCTGGTCACACACAGCACTAAAATTTAGGTGTTTTTTAATATCAGCTGTTATTCATCTGTTTCTTTGTTTTCAAGTGACAGCTTGGAGTCTCTCCATTCCGGGATTGGGGATTAAAGGAGACCCCAACTGCCACCTCTGTGGTCAGCACTGGGTGATCTGCTGAGCCCAGAGACCAGGAGCACATGCTACCTAACACTGACCTGTGCTTCTCACGACTCTCTTTACTTTCAG
Seq C2 exon
GATGGCAAATCCTATGAGGAGATGAAGAACAGCTTAGGAGATGTGTCGGCTCTATCTGAGATCACGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763:ENSGALT00000009258:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTCTGGGTTGGCAAAGC
R:
CCGTGATCTCAGATAGAGCCGA
Band lengths:
254-2122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]