DreINT0022378 @ danRer10
Intron Retention
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20276910-20279353:-
Coord C1 exon
chr24:20279165-20279353
Coord A exon
chr24:20276970-20279164
Coord C2 exon
chr24:20276910-20276969
Length
2195 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
ACTTTACGTGTATATTCCAGGGA
3' ss Score
7.86
Exon sequences
Seq C1 exon
ATTTTTCTCTGGATTGGTAACTCGGCAAACCAGTATGAGATCCAGGAGTCCAGCAGCAGTGCAGTAGAGTATCTGAAGACTCATCCGGCAGGACGGGACGCCGGGACCCCCATCACCACTGTTAAACAAGGCTACGAGCCGCCAACCTTCACCGGCTGGTTCAACGCCTGGGACGCGCACAAGTGGAGC
Seq A exon
GTGAGTCTCTAACCGTCCAGCAGGCGGCAGTAAAGCACAACACACATTCACTAACACACTAAACAACTCCATCAAAATCATGTCTGACGATCATCTCACCTACTAATAAATATATCCTTAAGCTCAACATGAAATTCAAAACTAAACCTTTTTTTTTTTACTTTCTCAACATGTTTCTGACATTATTGTGCATCATTCTTTAAATATTTTATCCAAATAGGTCTGTCATGATCATTTTTTTTTTATTTCACTTACCATGTAAATAAATTTAAACAAATATATTCATATATATTTTTTGTTTATTTATTTTTTCTGTTTTTACATATTTAGGCCTGTACCCAGCCTGGTGAAAGAGGTGGTTCTTTTCTCAAAAAATGAAAGTTTTTGGGGTTATTTGCCTCCTTTTCTATTAAATTATGAAGGTCGCTGAGTGTAAATGAGTGTGTGTGGATGTTTTCCAGAGATGGGTTGCAGCTGGAAGGACATGCGCTGCGTGAAACATATGCTGGATAAGTTGGCAGTTCATTCGAATGAATGGTGACCCCAGATTAATAAAGGGACTAAGCCGAAAAGAAGAAAGAAAATACTGCATATTTTGTGACATTTTAAGCACTAATTTAAACTGGATTAGCTTGTCGGGTGGTCATCATAACCACATGTTTTATTGCACCAAAACATTTTCTAAGGATTTAGAACATGCAAAGAAAAATGAATAAAGCTATTTTTAAAATACAAATTTATCCTGTCACATCATTAAAAAGGGAAATCTGTTAAAGTTTTAAATTGAAAAACTGTAGCCTTTAGTAGACAGAATTTCCTCAGTCCGAATTTGGCCATTTGAATAAAAAAATTAAAACATAATAATAATATTAATAACAATAACAATAATATTAATGTAGATCTTCACGATTTTGTCTTGAATAAAATGACATTTGAATATTTATCAATAGCAGAATTTGCCAAAATAGTATTTAAATGAATTCTAATATGGACTGCTTTTAGTGCTTCTCATTGGTTTTTATTTTTATTTTTTGTTCCAGGAATATAGATATAGAATAAAATACAGAAAAAAAGTTACTTGTAAAACGTTTTCTCTATTTAAAAACAATACAGCAGTGAAAGGTGACTTCACTTACGCCAGATTTCTAGCACAGCTGGATGTTGAACTCATAAAAATTGTTAATTGTTTGCATTGAACAAAACTATTGGAGTAAGCGACAGACAACAGAGGATTCCGCTTGGTTTTAAAGCCTTATTTGATGGGTTATTTTTACAACTTATGATGTCGCAGCAGTCAAAATTAGACAAATTAGTTCATGTATAGTACAAATTGTTGACCTTTGTCAGAGGGGTGGGTCTTTTGTATTTACATTCATACTGTTATTTTTACCTGAATGAAACTACTTTTCATTAAAACTTTAACTGCTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTAAATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATGTTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATATGATAGTTTGTTTTATCTTTTTTATTAAATTTCTTTTTTTTTTATATGTGTTTTTTTAGGGAAATTTGAACTAAACAGATTTAAAGATTTTATACTGTTTAAACTTTAAATTTAATATATTTGTATAGTTGTTTTAAATGTTCTATTAAAATCATACTTTTTAAATGAATTTGTTCATATGAATATAGCCATTGTTGCTAACTTAAATCATAAATAACTACATTAATATGCTAAGCATTCATCATTTAAAAGTACAATAGTTTGTGCAGAAAAACTACATTGCCCATGATTCTGTGCAAAATGCCACCAATCAGAGGCATGCAGAAAGCAACGCACAACAACAACAACAGCAACAACAACAAACAACAACAAACAGATCTTAATTTCCTTTCAAACTAAATGCTGAACATTGCTGAAAAAGTAGATGGGCACAATACTGAGCTTTATTCCTACTGGATAAAATCCAGCAGCACAATTCCTCATAATATGAAACTAAATGTGTAATTTCATGTTGAGTTTAAACCATTTGACCATGATTTAATATTTCAAATCAACACACTTTTTGAGTTTGACTTTACGTGTATATTCCAG
Seq C2 exon
GGAGGCCTTTCATATGAAGAGATGAAAAGCAAGCTGGGTGATGTTTCACAAATCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909:ENSDART00000048940:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]