HsaINT0180205 @ hg19
Intron Retention
Gene
ENSG00000136059 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:30906]
Coordinates
chr3:38047283-38047743:+
Coord C1 exon
chr3:38047283-38047465
Coord A exon
chr3:38047466-38047671
Coord C2 exon
chr3:38047672-38047743
Length
206 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TGCCCCGATTCTTGCTCCAGAGC
3' ss Score
7.67
Exon sequences
Seq C1 exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAAGTGAGTGGAAGGAGGCGGTGGCCTGGGGCCAGGAGTACCTGAAGACTCACCCAGCAGGGAGGAGCCCGGCCACACCCATCGTGCTGGTCAAGCAGGGCCATGAGCCTCCCACCTTCATTGGATGGTTCTTCACTTGGGACCCCTACAAGTGGACT
Seq A exon
GTGAGTGAGGCCTGAAACCCCCAGCCCTACCCTAATTTGTGGGGAGAGGAACCTGACCTGGGCCAATGGAATGAGGAGGCACTGCCCTGGCTGGGGATTGCCAGTGTGTGCGAGAGACCTGGTCTTGTCCTCAGGCCCCTCATGTGTCCCATTGGTGCCCCCTTCTCCTGCCCTGGCCCTGATACTTGCCCCGATTCTTGCTCCAG
Seq C2 exon
AGCCACCCGTCCCACAAGGAAGTGGTGGATGGCAGCCCGGCAGCAGCATCAACCATCTCTGAGATAACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059-VILL:NM_015873:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.2=78.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCCTGTGGCTTGGGGAA
R:
TGCTGTTATCTCAGAGATGGTTGA
Band lengths:
255-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)