MmuINT0172936 @ mm9
Intron Retention
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:118979001-118979467:+
Coord C1 exon
chr9:118979001-118979186
Coord A exon
chr9:118979187-118979395
Coord C2 exon
chr9:118979396-118979467
Length
209 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
AGTCCAACTCTTGACCCCAGAAC
3' ss Score
4.17
Exon sequences
Seq C1 exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAGGTGAATGGAAGAAAGAAGCAGTGGCCTGGGGCCTTGAGTACCTGAGGACTCACCCAGCAGAGAGGAGCCTGGCCACACCCATCTTTGTGGTCAAGCAAGGCCATGAGCCAGCCACCTTTACCGGGTGGTTTGTCACCTGGGACCCTTACAAGTGGATG
Seq A exon
GTGAGACGTGATGCCCCACCTCTGCTTAATCTGGTGTGTATGTGGGGGTGGGGGTGGCAGTGACACTGGAAGAGGCCTCTCCTTGGGCAAGGACCTCCTGTGAGTCAGGGGGAGGGGAACCTGATCTTGGGCTTTAGGCTCCTTCCTGGGTTTCAGGGGAGCTCCTTCCTTTACCCCAGTCCTGATAATAGTCCAACTCTTGACCCCAG
Seq C2 exon
AACAGCCAGTCCTACGAGGAGATGGTGGGGAACAGCCTGGGACCGGGATCTGCAATCTCTGAGATGACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775-Vill:NM_001164567:17
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(64.5=79.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCCTGTGGCTTGGGGAA
R:
CATCTCAGAGATTGCAGATCCCG
Band lengths:
252-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: