BtaINT0159764 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11495071-11495495:+
Coord C1 exon
chr22:11495071-11495256
Coord A exon
chr22:11495257-11495423
Coord C2 exon
chr22:11495424-11495495
Length
167 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
ATCCTGATTCTTGCCCCTAGAAC
3' ss Score
9.17
Exon sequences
Seq C1 exon
ATCTTCCTGTGGTTGGGGGCAGCTGCCAGCGAGTGGAAGCAGGAGGCTGTGGCCTGGGGCCAGGAGTACCTGAAGACCCACCCGGCAGGGAGGAGCCTGGCCACACCCATTGTGCTGGTCAAGCAGGGCCACGAGCCTCCCACCTTCATTGGATGGTTCTGCACCTGGGACCCCTACAAATGGAGT
Seq A exon
GTGAGTGACACCTGGACTCCCCCATCCCCACCCTAATCCACAGGAGGGGGCCGCCCTGGTATACTGAGGGGGAGCCATCACCCTGCCCAGGGACCTCCGGTCTGTGGAGGGAACCTGATCCCTTTGTTGCCCCTCCATCAAGCTCCCATCCTGATTCTTGCCCCTAG
Seq C2 exon
AACACCCAGTCCTACGAGGAGGTGGTGGCGGGTGACCCGGGAGCAGTTTCTACCATCTCTGAGATAACAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963:ENSBTAT00000017231:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.6=79.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCCTGTGGTTGGGGGC
R:
GATGGTAGAAACTGCTCCCGG
Band lengths:
243-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]