MmuEX0051349 @ mm9
Exon Skipping
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:118977430-118979467:+
Coord C1 exon
chr9:118977430-118977574
Coord A exon
chr9:118979001-118979186
Coord C2 exon
chr9:118979396-118979467
Length
186 bp
Sequences
Splice sites
3' ss Seq
AGGCCTCCTCTGTGGCCCAGATC
3' ss Score
4.04
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCTTCCCGAGGAGGTGTGGAGCATCCAGCCCCGACTGTTCGAGTGCTCCAGTCACGCAGGCTGCCTGGTCCTCACGGAAGTGCTGTTCTTTGGCCAAGAGGACTTGGACAAGTATGACATCATGTTACTAGACACCTGTCAGGAG
Seq A exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAGGTGAATGGAAGAAAGAAGCAGTGGCCTGGGGCCTTGAGTACCTGAGGACTCACCCAGCAGAGAGGAGCCTGGCCACACCCATCTTTGTGGTCAAGCAAGGCCATGAGCCAGCCACCTTTACCGGGTGGTTTGTCACCTGGGACCCTTACAAGTGGATG
Seq C2 exon
AACAGCCAGTCCTACGAGGAGATGGTGGGGAACAGCCTGGGACCGGGATCTGCAATCTCTGAGATGACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.208
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(32.9=51.0)
A:
PF0062617=Gelsolin=PD(64.5=79.0)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCGAGGAGGTGTGGAG
R:
CATCTCAGAGATTGCAGATCCCG
Band lengths:
210-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types