GgaEX1063107 @ galGal4
Exon Skipping
Gene
ENSGALG00000005763 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr2:4587757-4590780:+
Coord C1 exon
chr2:4587757-4587901
Coord A exon
chr2:4588655-4588843
Coord C2 exon
chr2:4590712-4590780
Length
189 bp
Sequences
Splice sites
3' ss Seq
AACACATTCTCCCATTGCAGATT
3' ss Score
10.27
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GTTTCAAGAGCAGATCACACACTACCAACCTCGCCTCTTCGAGTGCTCCAACCAGACGGGTCGGTTCATCATGACAGAGGTGGTGGATTTCTGCCAGGAAGACTTGGATGAAGATGATGTCATGTTACTAGACACTTGGGAAGAG
Seq A exon
ATTTTCCTCTGGGTTGGCAAAGCCTCCAACACATATGAGAGGAATGAGGCGGTTGCCTCGGCTAAGGAGTATCTCAAGACCCATCCAGCAGGGAGAGACTTGGCAACTCCGATCATACTGGTGAAGCAGGGCTGTGAGCCCCTCAACTTCACAGGGTGGTTCAACGCTTGGGACCCCTACAAATGGAGT
Seq C2 exon
GATGGCAAATCCTATGAGGAGATGAAGAACAGCTTAGGAGATGTGTCGGCTCTATCTGAGATCACGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763-'25-21,'25-20,26-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
PF0062617=Gelsolin=PD(63.3=79.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAGCAGATCACACACTACC
R:
ACCGTGATCTCAGATAGAGCCG
Band lengths:
210-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]