DreEX6094741 @ danRer10
Exon Skipping
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20276910-20280835:-
Coord C1 exon
chr24:20280691-20280835
Coord A exon
chr24:20279165-20279353
Coord C2 exon
chr24:20276910-20276969
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATCTCCTCCTCCTCCCTCAGATT
3' ss Score
11.04
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
ACTGGAGGAAGAGGTGTCACTTCATGAGCCCCGTCTGTTCGAGTGCTCCAATCAGACAGGTCGATTCCTCATGACAGAAGTGGCCGACTTTACTCAGGATGACCTGGATGAGGACGACGTCATGCTGCTCGACACCTGGGATGAG
Seq A exon
ATTTTTCTCTGGATTGGTAACTCGGCAAACCAGTATGAGATCCAGGAGTCCAGCAGCAGTGCAGTAGAGTATCTGAAGACTCATCCGGCAGGACGGGACGCCGGGACCCCCATCACCACTGTTAAACAAGGCTACGAGCCGCCAACCTTCACCGGCTGGTTCAACGCCTGGGACGCGCACAAGTGGAGC
Seq C2 exon
GGAGGCCTTTCATATGAAGAGATGAAAAGCAAGCTGGGTGATGTTTCACAAATCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909-'18-24,'18-23,19-24=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.317 C2=0.050
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
PF0062617=Gelsolin=PD(63.3=79.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGAAGAGGTGTCACT
R:
CAGTGATTTGTGAAACATCACCCA
Band lengths:
203-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]