BtaEX0039616 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11489255-11495495:+
Coord C1 exon
chr22:11489255-11489434
Coord A exon
chr22:11495071-11495256
Coord C2 exon
chr22:11495424-11495495
Length
186 bp
Sequences
Splice sites
3' ss Seq
AGGCCCCCTCTGTGGCCCAGATC
3' ss Score
3.43
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GGGCACCCCAGGCACAGCAGGAAGGGGCAGCCAGCACCCGCCGTGAGCCTCTTCCACATCCAAGGCACCGACAGCTACAACACCCGGACCATGGAGGTGCCAGCCCGCGCCTCAGCCCTCAACTCCAGCGACGTCTTCCTGCTGGTGACAGCCAACCTCTGCTACCTCTGGTTTGGAAAG
Seq A exon
ATCTTCCTGTGGTTGGGGGCAGCTGCCAGCGAGTGGAAGCAGGAGGCTGTGGCCTGGGGCCAGGAGTACCTGAAGACCCACCCGGCAGGGAGGAGCCTGGCCACACCCATTGTGCTGGTCAAGCAGGGCCACGAGCCTCCCACCTTCATTGGATGGTTCTGCACCTGGGACCCCTACAAATGGAGT
Seq C2 exon
AACACCCAGTCCTACGAGGAGGTGGTGGCGGGTGACCCGGGAGCAGTTTCTACCATCTCTGAGATAACAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(47.8=55.0)
A:
PF0062617=Gelsolin=PD(63.6=79.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCACAGCAGGAAGGG
R:
GGCTGTTATCTCAGAGATGGTAGA
Band lengths:
244-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development