HsaEX6055045 @ hg38
Exon Skipping
Gene
ENSG00000136059 | VILL
Description
villin like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr3:38004255-38006252:+
Coord C1 exon
chr3:38004255-38004399
Coord A exon
chr3:38005792-38005974
Coord C2 exon
chr3:38006181-38006252
Length
183 bp
Sequences
Splice sites
3' ss Seq
AGGTCCCCTCTGTGGCTCAGATC
3' ss Score
3.85
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCTCCCTGAGGAGGTCCCCAGCTTCCAGCCACGACTGTTTGAGTGCTCCAGCCACATGGGCTGCCTGGTCCTCGCAGAAGTGGGGTTCTTCAGCCAGGAGGACCTGGACAAGTATGACATCATGTTACTGGACACCTGGCAGGAG
Seq A exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAAGTGAGTGGAAGGAGGCGGTGGCCTGGGGCCAGGAGTACCTGAAGACTCACCCAGCAGGGAGGAGCCCGGCCACACCCATCGTGCTGGTCAAGCAGGGCCATGAGCCTCCCACCTTCATTGGATGGTTCTTCACTTGGGACCCCTACAAGTGGACT
Seq C2 exon
AGCCACCCGTCCCACAAGGAAGTGGTGGATGGCAGCCCGGCAGCAGCATCAACCATCTCTGAGATAACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059-'31-41,'31-39,35-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.066 C2=0.375
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=53.1)
A:
PF0062617=Gelsolin=PD(63.2=78.7)
C2:
NO
Main Skipping Isoform:
ENST00000283713fB29752
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGGTCCCCAGCTTC
R:
TGCTGTTATCTCAGAGATGGTTGA
Band lengths:
212-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains