RnoEX6038126 @ rn6
Exon Skipping
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127750032-127752335:+
Coord C1 exon
chr8:127750032-127750176
Coord A exon
chr8:127751872-127752057
Coord C2 exon
chr8:127752264-127752335
Length
186 bp
Sequences
Splice sites
3' ss Seq
AGGCCTCCTCTGTGACCCAGATC
3' ss Score
4.59
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCTTCCTGAGGAGATTTCCAGCATCCAGCCCCGACTGTTTGAGTGCTCCAGCCACTCGGGCCACCTGGTCCTCACGGAAGTGGTGTTCTTTGGCCAAGAGGACTTAGACAAGTATGACATCATGCTACTAGACACCTGTCAGGAG
Seq A exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAGGTGAATGGAAGAAAGCAGCAGTAGCCTGGGGCCATGAGTACCTGAGGACTCACCCAGCAGAGAGGAGCCTGGCCACACCCATCATTGTGGTCAAGCAGGGCCGTGAGCCTGCCACCTTTACTGGGTGGTTTGTCACCTGGGACCCCTACAAGTGGACG
Seq C2 exon
AGCAGCCAGTCCTACGAGGAGATGGTGGAGGGCAGCCTGGGTCCGGGATCTGCAATCTCTGAGATAACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446-'22-32,'22-27,25-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.016 C2=0.083
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.6=55.1)
A:
PF0062617=Gelsolin=PD(62.8=79.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCTGAGGAGATTTCCAGC
R:
ATCTCAGAGATTGCAGATCCCG
Band lengths:
210-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]