GgaEX1063107 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:4516636-4519674:+
Coord C1 exon
chr2:4516636-4516795
Coord A exon
chr2:4517549-4517737
Coord C2 exon
chr2:4519606-4519674
Length
189 bp
Sequences
Splice sites
3' ss Seq
AACACATTCTCCCATTGCAGATT
3' ss Score
10.27
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CCATGCACGAGGAAGGTTTCAAGAGCAGATCACACACTACCAACCTCGCCTCTTCGAGTGCTCCAACCAGACGGGTCGGTTCATCATGACAGAGGTGGTGGATTTCTGCCAGGAAGACTTGGATGAAGATGATGTCATGTTACTAGACACTTGGGAAGAG
Seq A exon
ATTTTCCTCTGGGTTGGCAAAGCCTCCAACACATATGAGAGGAATGAGGCGGTTGCCTCGGCTAAGGAGTATCTCAAGACCCATCCAGCAGGGAGAGACTTGGCAACTCCGATCATACTGGTGAAGCAGGGCTGTGAGCCCCTCAACTTCACAGGGTGGTTCAACGCTTGGGACCCCTACAAATGGAGT
Seq C2 exon
GATGGCAAATCCTATGAGGAGATGAAGAACAGCTTAGGAGATGTGTCGGCTCTATCTGAGATCACGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=50.0)
A:
PF0062617=Gelsolin=PD(63.3=79.4)
C2:
PF062807=DUF1034=PU(13.1=56.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCACGAGGAAGGTTTCA
R:
CCGTGATCTCAGATAGAGCCGA
Band lengths:
227-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]