RnoINT0162878 @ rn6
Intron Retention
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127750032-127752057:+
Coord C1 exon
chr8:127750032-127750176
Coord A exon
chr8:127750177-127751871
Coord C2 exon
chr8:127751872-127752057
Length
1695 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
AGGCCTCCTCTGTGACCCAGATC
3' ss Score
4.59
Exon sequences
Seq C1 exon
GCTTCCTGAGGAGATTTCCAGCATCCAGCCCCGACTGTTTGAGTGCTCCAGCCACTCGGGCCACCTGGTCCTCACGGAAGTGGTGTTCTTTGGCCAAGAGGACTTAGACAAGTATGACATCATGCTACTAGACACCTGTCAGGAG
Seq A exon
GTAAAGTGGCCACTCCTGTTTGGCTGGGCTGGGAATGCAGGGTGTGCAACGGTGGTGTTGGCTGACTGATTGTTGGCATGGACTCAGAATCTGGGCGAGACAGAGTTGTGTTGTGTGTGATTGTGACCTTGCGTGTTGTGTGTAATACTGCGTGTCCCGTGATGCTTTGTGTGCCTCCATGGGACTGAGGGTCTGGCTGGTTACATGGCACTGCCGGATGTAGATGCGACCAGGTAGCATAGGTGAGTCTTTGAACCTACACATGGTTCGCCATAGCTGTGTGTTAGCCAGACCATGCCAGCAACTGTGTAGTCCAGTATAGTCTAGTACAAACAAGAACTGGCCGGACCAGCTGTTATGGTGACGCTGTGTGTGCACGTGTCTGTGTGAAAGGGAAAGAAGGAACATGTGGTTGACTGTTGGTGTGACTGAGCAACTGCATTTGAGATGGCATATGTGACCAGCCAGAAACGCGTGACAGGTAACAAAATGTGATGTGTCTATGTGCTGGCATCGGATGACCATATGTGGCTGTGGTCAGCTAGCTGGCTGTATGGCAATGGACAGTGTATCTCTGTAGCTGTGATACTGCGTGTGTGTCATTGTGTGTGGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTGTGTGTGGTGCTGTCTGTGTTGGGAGAAGGCTGAGCTCTTAGAACATCTCAGAGAAAACCCAAGCCCAAACTCTACCCTCTCTCCCCCACTGCACAGCACACCCTGTTACCCAGCCAGCCCCTCTCGGATCAATCTCTCCTGACTCCACCTTGCTTCCTGAGCATGCCAGGCACATCCACCATAGGAGACCCTTGGTTTCCACCTAGTTCTTCACTTTCTCCTGAGACATAGACATGGCCTGCTCCCTCGTGAAGGATCTAAGGGGGCAGAGATCTTTCTCAAATCTTTCTGGGTTTTTTTGGTCTTTGCTTTTAAACATTATTAAATTTTTATTTTTTATTATATATAAGTACACTGTAACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGGGTCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTCACCGCTGAGCCATCTCTCCAGCCCTAACCCTGAATGTCCGATGTGTTTCCATCTCCCAAGTGCTGGGATTAAAGGCCTGACCCACCCTCTCCTGCTTATGTGGTCCTTGGGGTCTAGGGCTTTGCTATGCAAGTGCTCTGACTGAACAGGAACCCCAGGCCCTCGCTTTTTTTTTTTTGAGGGTATCATACTGCCCAAACTAACCTCAAACTCTCTCTGTAGCCAAGGACTGCCTGGAACTGATCCTCCTGCCTCCACTTTGCCAGTGCTGTCATTAAAGACATGTGCCCCAACACCTGGCTCAGGGACTGAAGCGTGTGTTTTCCACTGCCAAGTCTTTAGTGCCAAGCACATGCTAGTTCTTCGTACTATTCATAGATTAGGTACATGCATGCATGCCTGTGACCTCAAGTGTTCATGGGTGTGTGGACACCATAACTTGCTGGGTTCTTGGACGGGTGGGCATGCATGCAGGCTTCTGAGGCCATCGGAGTTGGGCAGAGGTGGCTGTCGTGAGCAGTCCCTCCACCGGTCCAAGCCCAGGCCTCCTCTGTGACCCAG
Seq C2 exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAGGTGAATGGAAGAAAGCAGCAGTAGCCTGGGGCCATGAGTACCTGAGGACTCACCCAGCAGAGAGGAGCCTGGCCACACCCATCATTGTGGTCAAGCAGGGCCGTGAGCCTGCCACCTTTACTGGGTGGTTTGTCACCTGGGACCCCTACAAGTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446:ENSRNOT00000015888:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.6=55.1)
A:
NA
C2:
PF0062617=Gelsolin=PD(62.8=79.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCTGAGGAGATTTCCAGC
R:
GTCCACTTGTAGGGGTCCCAG
Band lengths:
330-2025
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]