GgaINT0102647 @ galGal3
Intron Retention
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17842969-17843556:-
Coord C1 exon
chr2:17843456-17843556
Coord A exon
chr2:17843331-17843455
Coord C2 exon
chr2:17842969-17843330
Length
125 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
GCTGTTTGTTTTTACACCAGGAG
3' ss Score
6.7
Exon sequences
Seq C1 exon
TAATTGCATTAGCACCTAGCACGGATTCCTTGAACAGCAGTAAAAGCCCTCATCTGGGAAACAGTTTTTTACCGGACAATTCTCTTCCCGTGTTAAATCAG
Seq A exon
GTAATACTTATTTCTTTCTTCTAAACTTCAACTTATTACAAGTTAACTCATCGTAGTCCTCCTATTTTGCTGCGATGTGAAATTTTAAGCAGCTGAGAGGGTTTTGCTGTTTGTTTTTACACCAG
Seq C2 exon
GAGATAACCTCCAGCGGACAAAGCACCAGCAGTTCATCAGCTCTTTCCACTCCACCACCTGCTGGGCAGAGTCCAGCTCAGCAAGGCTCAGGAGTCACGGGAGTTCAACAGGTCAATGGTGTGACAGTGGGGGCACTAGCTAGTGGTATGCAGACTGTAACCTCCACCATTCCTGCAGTGCCTGGTGTGGGTGGAATAATTGGAGCGCTGCCAGCCAGCCAGCTGGCAATCAATGGAATTGTAGGGGCTTTAAATGGGGTAATTCAGACCCCAGCAACAATATCACAGAACCCTTCTCCTCTCACTCATGCAACCGTGCCACCCAATGCAACGCATCCTCTGCCAACTACATTAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928:ENSGALT00000012873:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=NA C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACGGATTCCTTGAACAGC
R:
TGGTGGAGGTTACAGTCTGCA
Band lengths:
253-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]