MmuINT0099333 @ mm10
Intron Retention
Gene
ENSMUSG00000026743 | Mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:18206551-18207144:+
Coord C1 exon
chr2:18206551-18206639
Coord A exon
chr2:18206640-18206779
Coord C2 exon
chr2:18206780-18207144
Length
140 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TTTCATTCTTATTACACTAGGAC
3' ss Score
7.97
Exon sequences
Seq C1 exon
CTCCTCCTCCTGATTCCCTGAACAGCAGTAAGAGCCCACATATAGGAAACAGCTTTTTACCTGACAATTCTCTTCCTGTATTAAATCAG
Seq A exon
GTAAACTTTTTTGAGAGTGGTTAAATGTTCATTTGTGTGTTTTACTTGCAAACATTGCACCTTACATTGAATGATTTAAAATAATGCTAAACAGTCTTGCTGTGCTCTTTGCAACTTCAGTTTCATTCTTATTACACTAG
Seq C2 exon
GACTTGACCTCCAGTGGACAAAGCACCAGCAGTTCTTCTGCTCTTTCTACTCCCCCTCCTGCTGGCCAGAGTCCTGCTCAGCAGAGCTCTGGAGTCAGTGGGGTTCAGCAGGTGAATGGCGTGACAGTGGGGGCACTAGCTAGTGGGATGCAGACCGTCACATCCACCATCCCAGCTGTGTCCGCAGTGGGTGGAATAATTGGAGCTCTGCCAGGTAACCAACTGGCAATTAACGGCATTGTGGGAGCTTTAAATGGTGTGATTCAGACTCCAGTCACAATCTCCCAGAACCCTGCCCCTCTCACCCACACCAGTGTACCACCTAATGCAGCGCATCCAATGCCGGCCGCCGCACTGACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743:ENSMUST00000114680:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=0.525
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAACAGCAGTAAGAGCCC
R:
GATGGTGGATGTGACGGTCTG
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types