RnoINT0092926 @ rn6
Intron Retention
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84972618-84973209:+
Coord C1 exon
chr17:84972618-84972706
Coord A exon
chr17:84972707-84972844
Coord C2 exon
chr17:84972845-84973209
Length
138 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TTTTATTCTCTTTCCCGTAGGAC
3' ss Score
12.84
Exon sequences
Seq C1 exon
CTCCTACTACTGACTCTCTGAACAGCAGTAAGAGCCCGCATATAGGAAACAGCTTTGTACCCGACAATTCTCTTCCTGTATTAAATCAG
Seq A exon
GTGAATTTTTTGCGTGTGGTTATGTTCATTTGTGTGTTGTACTTGGGAACATTGCACATTACATCTAGTGATTTAAAATTATGTTTAAACACTCTTGCTGTGTTCTTTTCAACTTGGGTTTTATTCTCTTTCCCGTAG
Seq C2 exon
GACCTGACTTCCAGTGGGCAAAGCACCAGCAGCTCTTCTGCTCTTTCCACTCCCCCGCCTGCTGGGCAGAGTCCAGCCCAGCAGGGCTCTGGAGTTAGTGGGGTTCAGCAGGTGAACGGCGTGACAGTGGGGCCACTAGCTAGTGGAATGCAGACTGTCACATCCACCATTCCTGCTGTGTCTGCAGTGGGTGGAATAATTGGAGCTTTGCCAGGTAACCAGCTGGCAATCAATGGCATTGTAGGAGCGTTAAATGGTGTTATTCAGACGCCGGTCACAATATCCCAGAACCCTGCCCCGCTCACCCACACCAGTGTGCCACCTAATGCAGCACATCCCATGCCAGCCGCCGCCCTGACTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249:ENSRNOT00000034157:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACAGCAGTAAGAGCCCG
R:
CAGACACAGCAGGAATGGTGG
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]