GgaINT0103686 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79341391-79342874:+
Coord C1 exon
chr1:79341391-79341514
Coord A exon
chr1:79341515-79342756
Coord C2 exon
chr1:79342757-79342874
Length
1242 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TTTTATTTTTTTTCTTCCAAAAG
3' ss Score
1.82
Exon sequences
Seq C1 exon
ATACACATTTGGCAAGCCTGTTCCTGGCCATGTGAGCTTCCGTGTCTGCAGGAAATTTGAACACCCAGCCACTGCTTGCTATGGTGAAGAGGCTAAGGCAGTATGCGATGAATTCTCCGGACAG
Seq A exon
GTGAATTTTGAGTATTCATCAGGTGGAGTGATAGGAGAAAATGTTGCTTATTGAGCCTGCCTTGTAGGTATAAATTTGCTCTGCTGGAGTGTGTAGAAACATGAGTATGAAGAGGGGAGTGATTTCATGTATTTTAAGGAAGCCTGAAGAAGGAAAGAAGATTGGGTGCAAGTTGAAATGTGAAAGGTCTATGTAGTAAGAAAGATGTGCATATAAGCAAAAAACTGATACAGAAGGAAGAGAGTAAAGAAACAAAAAAGCTCAGTAGATTAGAGGATACAAGGGATTAATAAGATAGAAAGGAAAAGCAGTTAGCTCAGAGGTTGAAGTTGGCTTGCACTACAGAAAATGTGTGGGATCAGAAGCTGTTCCCTGAGGCAAGAAAGGAACAGAAACTGGGGGAGGGGTGATGCAGTTTAAGGAAAGAAGAAATGAACATGAATTTAGGAGCAGCGGTTAAGACAGAGAGACACCCCACATTCCCTTGACTTTGCTCTACAGAGCAAAACTCTTTGCAGCATGACAAGTGCACTAGTGCTAACTTAATTGACCGAAACAGAGGTAATAGCAGTTGTGGAAATGACCCAGGATAATCGAGCAAGCAGAAAAGAGCATGGTCCTTACAGTATGCTATGGTATCATTCCTGCAATTGTCTCTTCTGCTGTTATCCATGCTAAACAGAAATACGAACCCTGCAGTATTGCTCTGTTCCAGGTAGTATATCTCTGTTCTAGGTAGCTCCTCCATTTATTGCAGAGACCTGCCTTGGACATGAAGATGCTAATAAGAGATGGAAAGCATTGGAGATACTTTTCTAGCTGTTTTCTTCTTTATACACATACAATCTTTATGTATGGTTTATGTACCACTCAAACTGCTTGTACATTTTAAGTCAGCATCTATATTCTAATGTGCCTGTGTTCTGGCAAACATTTCCTGTGTGGCATACAGGTGAATAATTCCCTGTGCTTTGGTATGAAGAGTTTAGAATTCCAAACTTCATACACACCCAAATAAAAATCTAGGTTGCAAGTTCTTTGCTTTGATGTTCCTGCAGAATGCTCAATGCCTAGTCATTTATTGGTGTTTTCCAGTTTTGATAAAAACAAAGAAGAGAATGACCTATGAGCTTATGGGCTTCTCTTCCATTTCAAGGTAGCACAGAGTGATGGGATCATTAAGTTGGATAAACGTTGCAGTACATGAGACTGTAATATTCCTTTTTATTTTTTTTCTTCCAA
Seq C2 exon
AAGACAGACAACCATGGCTGCATTTCTAAACTGGTAAAAACCAAGTTATTCCAACTCAAGAGAACTGGATATGAGAACAAGCTCCATGTGGATGCTAAGATTGAAGAGGAGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATTTGGCAAGCCTGTTCC
R:
TGTTTCCTCCTCTTCAATCTTAGCA
Band lengths:
238-1480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]