GgaINT0103688 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79343107-79343853:+
Coord C1 exon
chr1:79343107-79343216
Coord A exon
chr1:79343217-79343672
Coord C2 exon
chr1:79343673-79343853
Length
456 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTCTGTTTTTACTCCCACAGGTT
3' ss Score
11.14
Exon sequences
Seq C1 exon
GAATTGTGTTGACTGGAACAAGCTTCTCTGAGATCACAACCACCATCAGCAAAATTACCTTTGAGAACTCAGATTCCTACTACAAACCTGGAATCCCCTTCTTTGGGCAG
Seq A exon
GTAGGAAAACTGAGAAGTGAAGCGTCATGAGTGCTTAACAATCATGTTGCTGAATCTCCTGGTGGATACTTGCCTACCCTCTGCAAAGATTCTGGTGCTCAGTACAGCTAATGTCTGGGGGCTTCCACTACTTTGCAAGTTTTGTAACCAGAGAATAGCAGCTGAGAGCATAACCCTCTATTCTTGTGTTTCAAGTTTTGCTTCTCTGGTCTCCTGCTTAATAAGAAGCCTTGATGTTAATGCATGTCAGTCTGTGTCCACTCTTCTGACATGGAGGTGAAGATAAAAAAGATTCAGAAAATCTGCAGCTCTCCTTGAAACATGTAATGTACATGTAAAATGCAGTGGAAACTTCTCTGTCTCAAGACAGACCCAACATCCTCAGCTTTGTGACATATCAGTCTGTACAGGTGGCAGGCATTGCTGTCTTGTATCATTCTGTTTTTACTCCCACAG
Seq C2 exon
GTTAAACTTGTGGATGGGTCTGGTTCTCCAATTGCCAATGAAACTGTGAGGATTTCTTTACAAGGAGGCCAGGAAATGAACTACACAACAAATGAAGAGGGCAGAGCACTATTTGCCTTGAACACTTCCACATTGTACTTCAATTCTGTTGGAATTAGAGTGAGTCCTGGGGGCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTGACTGGAACAAGCTTCT
R:
CTCCTCTGCCCCCAGGAC
Band lengths:
287-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]