GgaINT0103693 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C544]
Coordinates
chr1:75695833-75696795:+
Coord C1 exon
chr1:75695833-75695982
Coord A exon
chr1:75695983-75696624
Coord C2 exon
chr1:75696625-75696795
Length
642 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TCTTGACTTTTTCTGCTCAGGTG
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTGGGCTTGAGCTTCTCTTCTTCTGAAGGCCTGCCTTCTTCTGACACTCACTTACTGTTCAGAGCCTCCCCAAAATCCCTTTGTGCTGTCCGTGCTGTGGACAGTAGTGTTCTACTCATGAAGCCTGAAGCTGATCTGTCACACAGCTCA
Seq A exon
GTAAGTACTTATTCCATGTAGCATCTGGTCTGGTCAAGGCAAGAACAGCTCAGCAGAAATACTGAACAAACCTTGTTAGAGCTGACACAGAAATGCTGTCCTGTGCAGCTTCTCATCTTCCTTCAGCAGGCAAAAAGCTGAGAACTGTGCAGCAGCTGTTTGTTAGTGATTTTGCATGACATTAGGGATGGTAACTGGGAAACCCTCTTAAGGAGGCTTCTTTGCATGTCCAGGAACCAAAAGCTGTCTTGTGTTTAATGTTGATTTTTTAGGTGTTCTCTACAGCCATGGATATATTTTATTGGTGTAGTATCTAGAAGTGTCAGAGGGTTTATTCCCCTTTTGCTGAGCAGCAAATGATAAATCCAGAACAGGTAAAAAGGACAGTAACTGAGCTGGCCACTGTAATTCTTGATATATTTGAGCTGTAATAACCAGACTAATGTGCTGTTTATAGCAAAAGAGTCAGTATCTCCAAATTCAGATGTCTTTTTAGACTTGCAGTTTCCTATTGCACCCACTGCAAGGAAGACCATGGCTGTGTAGATTTGATTATTATGGTGCTTGCATCAAAATTCTTTAGTAGTGTTTTGTGACAGTGCATACTGAAAAATCCAAAATATCTTGACTTTTTCTGCTCAG
Seq C2 exon
GTGTATAGCTTGCTGCCAGTGAAGGAATTGCATGACTATCACCATGGTACAGACATGCTCTTGGAGGAGCCCTTAGAAGACTGTGTCCCCCTTAAGAAAATAATTCTGAATGGGATCACCTATTCTCCAGTAGTGGAGATGAATGAAGATGACACTTACAGCATTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(26.5=78.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCTTGAGCTTCTCTTCT
R:
TAGAATGCTGTAAGTGTCATCTTCA
Band lengths:
318-960
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]