MmuINT0102576 @ mm10
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121865734-121870650:+
Coord C1 exon
chr6:121865734-121865883
Coord A exon
chr6:121865884-121870491
Coord C2 exon
chr6:121870492-121870650
Length
4608 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCACCTCTTGTCTCTTACAGATA
3' ss Score
12.74
Exon sequences
Seq C1 exon
GTGGACCTGCGCTTCAGCACTTCTCAAAGTCTTCCCGCCTCACAAACCCGTCTGCAGGTCACAGCTTCTCCTCAGTCCCTCTGTGGCCTGAGAGCTGTGGACCAGAGTGTGCTACTCCTGAAACCCGAGTCTGAGCTCTCCCCTTCCTGG
Seq A exon
GTGAGTTCCTTTCTGCCTCTGTCCAAAAACCGTCCAAAGAGAACACAAGTTACCCTGGCTCTGATGAAACAGTGATTGTTCAGACTATAGGGATCTTGAATGTAAAAATACTGCATTTAATGCTGACAGCTTCTGTTAGGGAGCTCTTAATTGTAAAATCCCAAATAACGGATCAGAAAACTTTAGCCAATATACTGAAGACATGGAAGGAAATAAGGCGCTCTTTGAGTTGCAGAGCCTTCTGTGCTCTTACTGCACTTGTTGTGCCCCAGGAGTGGCTTGTCCCCTTCAGATGTTCTTGGTGGAGCTTTTCAGAGTCATGCTGCCCATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACTCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCTAAGAAGAAACTGGAGAGAGCACACAGTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGAAAATTCACCCAAGAGGAGTAGACTGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAATGAGGAGTTTGTTCTTTGAGAAAATCAACTAGATAGATAAACCCTTTGCTAGATTCACTAGAGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAAACGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATAAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAATCTGCAAGAAATGGACAAATTTCCAGACAGATATCCGGTACAAAAGTTAAATCAGGATCAAGTTAATGATCTAAACAGTTCCATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGATGGGTTCAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAGGGAACTCTAACCAACTCATTCTATGAAGCCACAATTACTCGGATACCTAAACCACAGAAAGATCCAACAAATATAGAGAACTTCAGACCAATTTCCCTTATGAATATCAATGAAAAAATACTCAGTAAAATTCTCGATAACAGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAAGGATGTAGGGATGGTTTAATATACGAAAATCCATCAATGCAATCCATTATATAAACAAACACAAAGACAAAAACCACATGATCACCTCCTTTGATTCGGAAAAAGAATTCGACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGTAAACCAGTAGCCATCATCAAAGTAAATGGTGAGACGCTTGAAGCAATCCCACTAAAATCAGGGACTAGAAAAGGCTGCCCACTTTCTCCCTACCTCTTCACCATAGTACTTGAAGTCCTATCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGATGAAGTCAAAATATGACTTTTTGCAGATGATATGATAGTATATATAAGTGATCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAAAAAGCCAATGGCCTTTCTCTACACAAAGAATAATCAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAACATAAAATATCTTTGTGTGACTCTAACTAAGGAAGTGAAAGATCTATATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAGAGAAGATCTCAGAAGATCTCCCATGTTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATAAAATTCCAACTCAATTCTTCAATGAATTAGAGAGGGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAACCTCTTCTCAAGGATAAAAGTACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGTAGACCAATGGAATTGAGTTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTATCATGTAGAAGAATGCGAATCGATCGATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGAATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAATTGGGGGAAAGCCTCGAAAATATGGGCACAGGGGAAAAATTCCTAAATAGAACAACAATGGCTTTTGCTGTAAGATCAAGAATTGACAAATGGGACGTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCTTAAATGAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAGCATGGACTCCAGAAAATCAAATAACCCCCTTAAAAGATGGGGCTCAGATCTAAACAAAGAATTCTCACCCGAGGAATACCGAATGGCCAAGAAGCACCAGAAAAAATTTTCAACATCGTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGACCAAAAATTCAGGTGACAGCAGATGCTTGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCATGTACAACCACTCTGGAAATCAGTCTGGCGTTTCCTCAGAAAATCAGACATAGTACTACTGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCAACTGGTAAGAAGGACACATACTCCACTATGTTCATAGCAGCCTTATTTGTAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAAATGTTTTATATTTACACAATGGAGTACTACTCAGCTATTAATAAGAATGAATTTGTGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGTATAGCGAAATATAAGATACAATTTGCAAAACACAGGAAACTGAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGAAACAATCACCCATGGAAGGAGTTACAGAGACAAAGTTTGTAGCTGAGACAAAAGGATCGACCATCTAGAGACTGCCATATCCAGGGATCCATCCTATAATTAGCCTCCAAACGATAACACCATTGCATACACTAGCAAGCCTTTGTTGCAAGGACCGTGATATAGCTGTCTCTTGTGAGACTAGGCTGGGGCCTAGCAAACACATAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCAACAACATTATGAACTAACCAGTTCCCCTGAGTTCTTGACTCTAGCTGCATATGTATCAAAATATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACAGGCAAACTTTGTATGCCCCAGTACAGGGAAACGCCAGGGCCAAAAAAAATGGGAATGGGTGGGTAGGGGATTGGGGGGGGGCAAGGGTCTGGGGGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATACGTAGTAAAAAAAAAGATTAAAAAAATAGCACTCCTTAGTTAAGATAATGCTGGGAAATTACTAGTCTTAAACTAACATGTAAATTAAACCAATATTAAATTAAGTTTAATGACGAGGTTTTATGAAGCTCATGCAGAACATGATTTTGGGAAGTATCCTGCTAAAATTTTTTCACTTTTTTAAATTTTACTTTCCCCAAATCTATTAAACAGAGATTTCTTGAGCAGTTGTTTTTAGCTGACAAATACTGGTAATTCCTTTTTAAAAAAATGCAAGGTTTATTTAAAGGGGATGTGGTTCCCTTGCTCACACCACCCTGCCATCACTGTGCACTGGGTGCCTTGTACTATTGATGAGAAGAGCTGTTTCTTGAACATTCAGGTATTTGTAGTCCTCACATTTATTTGTGTGTGGGGGGGAGATGAGTATGTTCCAAGAGAGAGGGTCCTGCCAGAACCAACAAGTCACTCAACTTGGGAACCACAATGTTAGCCAAATCTAACTCGGAAATATGCACCCCCATATCCCGCCCTCACCTCTTGTCTCTTACAG
Seq C2 exon
ATATACAATCTGCCAGGTATGCAGCAAAACAAATTCGTTCCAAGTTCCCGTCTGTCTGAAGACCAAGAAGACTGTATACTGTACAGTTCATGGTTGGCTGAGAAGCACACAAACTTAGTACCACATGGAACTGAGAAGGATGTCTATAGATATGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908:ENSMUST00000032228:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(25.8=78.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types