GgaINT0103701 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79357792-79358465:+
Coord C1 exon
chr1:79357792-79357875
Coord A exon
chr1:79357876-79358288
Coord C2 exon
chr1:79358289-79358465
Length
413 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTGTAATCACTGTTCCTTAGGTG
3' ss Score
6.96
Exon sequences
Seq C1 exon
GAGAGTCCGTGAAAGAGAAGTTTTCTCTGTTGCTTCCTTCAAATGTGGTACAAGACTCAGGCAGAGCATATTTCTCAGTGCTAG
Seq A exon
GTGAGTGATCTGCCTGAGAAGGGTCTGCTGGGAGAAAGAAACGTGCTGTTTCCACCCATCTGCATGACTGTGTTGGCCTCCTACCTCTCACACAGATTCTCCTCCTGGTTCCAAGCACACTTCATTCCCGCCTTTCATCTCTTCTGTCTCAAGTGCTTTCCCTTTCAATTCTGTTCTATTTGTCCCTCTTTCTGCATCTCGTTCTGTTCAGGTTTCTCTACTAGTGCCTGATATGTTGACTTATTACGCTCCTTTTTTTTCCTCTGTTGTTGTTCTGTGTTTTACTCCAGGATCATTATCAATACAGATCTTTCTTCTGCCATCTCCTCCTTCTGTTTTCCTTTAGATCCCTCTGATTTTGGCAGCTGATGTTGCATTTCATTAATATCCTTCTTGTAATCACTGTTCCTTAG
Seq C2 exon
GTGACCTCATGGGCACTGCCATGCAGAACCTGCACCAGCTACTCCAAATGCCGTTTGGTTGTGGTGAACAGAACATGGTCCTGTTTGCACCCAACATCTATGTCCTGGACTATCTGAACAAGACAGGACAGCTGAGTGAGGAGGTCAAATCCAAGGCCATCGGATACTTAGTGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTCCGTGAAAGAGAAGT
R:
CGCTCACTAAGTATCCGATGGC
Band lengths:
261-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]