MmuINT0041400 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr6:122024655-122025339:+
Coord C1 exon
chr6:122024655-122024738
Coord A exon
chr6:122024739-122025162
Coord C2 exon
chr6:122025163-122025339
Length
424 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTAATTCCTCTCACTTCCAGGTG
3' ss Score
10.71
Exon sequences
Seq C1 exon
ATGCTGAGATATCTGAAAAAATGTCCCTGGTCCTCCCACCAACAGTAGTGAAAGATTCAGCAAGAGCGCATTTCTCTGTGATGG
Seq A exon
GTGAGTCAATCCATCCCTGGGGGACTTGGAACAATATTCACTACCACAACCCTGCCCCCCACCATGATTCCAAATGTAGCTTCCAAACTACTACACTTGATCGCTTTAACATCCTTCTTCTGTCTTAATCCCCTCAATTCCCACTGGCTTCTAGCACACATCACCCATAAAATTCCTTCCCATCACTGAAAAGGCATTCATTCTTTTTTTTTTTCTTTCAATTTTTTTGTTAGATATTTTCTTCATTTATATTTCAAATGCTATCCTGAAAGGCCCCTATACCCTCCCCCCCCCTGCTCCCCTACCCACCCACTCCCACTTCTTGGTCCTAGCATTCCCCTGTACTGGGGCATAAAAAGTTTGGAAGACACTAATTTGTTCTTGAAGATATTGGCCATTCTGATGTAATTCCTCTCACTTCCAG
Seq C2 exon
GTGATATCTTGAGTTCAGCCATAAAAAACACACAAAACCTTCTCCATATGCCCTATGGCTGTGGGGAGCAGAACATGGTCCTTTTTGCTCCCAACATCTACGTATTGAAATATCTGGATAAAACCCAACAGCTGACTCAGAAGATCAAGACTAAGGCCCTCGGCTTCCTTAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
-Cpamd8:NM_008646:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATGTCCCTGGTCCTCCCA
R:
AGCTCTAAGGAAGCCGAGGG
Band lengths:
243-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: