GgaINT0103743 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79374991-79376523:-
Coord C1 exon
chr1:79376414-79376523
Coord A exon
chr1:79375153-79376413
Coord C2 exon
chr1:79374991-79375152
Length
1261 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
GTTTGCTTTTGCTTTACTAGGTA
3' ss Score
9.54
Exon sequences
Seq C1 exon
GAATAGTTGTGACTGGAATAGGCTCCTGTGAAATCACATCCATCATGAGCAAAGTCAGCTTTGACCTGTTGGACTCTCATTACAGACCAGGGATCCCACTCTTTGGGAGG
Seq A exon
GTAGGTAACTTCTGAGAACTTGGAAAGTGTACTGCCACAGCAAACTCACTGATTGTCAATGGTTTACAGGCCAGTTCGGCCCAGTTCCATGACTAGTGGGGTGGAGGGACCCACAGATCCACGGCCTGGGAAAGGGGGAAAGTGAAAGGGTGGGGAGATGGGCCTAAAAACAAAACAGCGGCAACAATCTGAGGAGGAAAGTTAATTTACTAAATATGATATCAGAATGCAAGATAACACAATATAATACAATGCAATTGGAATTGAAGCTAATAAATCAAATAAAATGAGTGTCCAAAAAACAAAGATCTTACTCTAATGCTGAAGGTGAGACGGCTAGGGAGCACACATGCAAAGACGAGCAGAAAGAGAAAAAATAATGTCTCATGGCTTGTGAAATGTTTTATCTTTCCCTCTGAACAGAAAACGGAAATGAAAAAGTCTTCTGGGGTATGTAGTTCTTCTCTTCTGAGAACCAGGTACTCGGAAAATTGACAGTCCATGGAACTGGAGCATTAACTCTTTAACTCCCGTTCTCTATGTTATGTTATGATGTGGAATACTGATAACAAAAATGATAAAACCATGACACTGGTGTGCTGTCATACAAGAGTAACATCACGGAGCAGCAAGCATGGTCCATTCCACAAGGAAACGTTAGCTAGGGGAAAAGTGTGACTATAACACAGGTAGGCATGGTCGCACTGGTCAAGAGTGCAGTCCCACAGTATCCAGCTGGACTAAACAGAGCAGGGATGTTAACAATTTCAGGTTCCACCAACAGTCTGGTGATCACCAGGCAATGTAAGGCAATGACTCAGAGCTAAGCTCAAACAAGGAAGTCCAGTCAACATGATGGGAACAGCAGGAGAAAGAACTGAGTGTAGATCTAACTGTGATGCAGGTTAGTCTAATGCTCTGGCAAGGCACGAGCCTAACTGAACTCAGAGTTCCTGAACTAAGAGGCAGGTGTTATGTGATGGATGTCTTCAAAGAGGCTGAATGTAACAATTAAAACCAGCTCAGAAACTCAAGGTGCTAATAGATGAGTTCCATGGGATGATTAGATTGTTTTGCTGATGATGTTCTGCTGCCTCAAACAACTTAGGACTCACCATGCACATTTCCACATGCTTCTAATTTGTTCTTCTCCATAAGAAACATCCAGCCTGGCAAGGAAGAAGAGGGGGAAGGGTTTTTAGAACTTAGGAATTATTTCTGTTTCTAGTTTAAAATCTGAAGTTTGCTTTTGCTTTACTAG
Seq C2 exon
GTAAAGCTGGTAGATGGTAATGATGCTCCCATTGCCAATGAAACCATCAGGATTTCTGTGAATGGAGACACGTACAAAGGCAATTACACTACAGATGAACAGGGACAATCCTGGTTTTCCATCAATACTACCATGTTCACAGAAGCCTCCCTGGAAATCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTTGTGACTGGAATAGGCTCC
R:
TCGGATTTCCAGGGAGGCTTC
Band lengths:
270-1531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]