GgaINT0104508 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192406320-192413321:-
Coord C1 exon
chr1:192413169-192413321
Coord A exon
chr1:192406505-192413168
Coord C2 exon
chr1:192406320-192406504
Length
6664 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
TCCATGTGCTTCTCCTCCAGACA
3' ss Score
9.26
Exon sequences
Seq C1 exon
GAGCACTGGATTTCCCCGCAGAATGCCAGCCACATCAAACCCATGCACCCCACCTCCATCCATGGAGTGGAGGACATGATCCGGCTGGGGGACTTGAATGAGGCAGGAATCCTTAGGAACCTGCTGATCCGCTACCGGGAGCATCTCATCTAT
Seq A exon
GTGAGTGTCTACTCCATCCCTATCTACTACTCTGCACTGTATCTCCAGCTCTCCATAGCTCTTGGAAACCCACATGGGTTTTTCCCTGATTTAAATAAGCATCCAGGATTCTAGGACCCAAATAGTTGAGTGTATCTGCACTGGTATGTTGTTCTTCTATGGAGAAATCATTGCAAAGTTTACAGTTGCCCCAGGGGCAGCTGGAGACCCTATTACCTGTGATGAGCAAAGTCCCTGTTACCTCCCTACACAGCCCCTGTTGAAGTTTATGGAATACATGTCAAGTTTATGCACATACATTAAGGAATTTATCCCAGGCCCCATACACAGTATAGTAACCATAAAGAAAAAAGACTTTGGCAACTATAAGCTGGATGTGGCCTTTCTGCATTCTCCCACTGAACTGAACTGTTAAGTCATCCAACCCAAGAGGGTGAAAAGAGCTATTGCTGGAGGTACAAGGGCTGGAGAAAGGATGAGAAGATGCACATGGGAATAACCATGCACTATGGAGTGAGAAGCTCAAAGAGCTCCAAAGTGTGTTTATAACGTCTGAGATCCTGACAGCTGAACTTTTAGGACAGTAATACCCCTCCTTAGGTTAGCTTGGTCATGTAACATCCAGTGGACCCGCTACAGCTTTTTCAACCCAAACAGACATCCATAAATCCAGGGTTTTACAAGGAGCCACTGTTCTGTGGCAGCACATCAAAAGCCAAATAAGACAAGAGTCAGCATTCAAGTTTCTGAGTTGTTTTTTTCACCATGCTATATACTGAATAGTCTGGTGCACATTCTGGTGATGGAAGTGAGGAAAGCATGTTCTTGCCACTAGTAAATGAACTCAAACAACCTATGTAAATATGATATTATTGCTGGCTATTTCTCCCATGCTACAGCTTTCTGTCACTTAGGTGAGTACCTGCTATGCCTCTGAAGGCCTTTTCAAGGCAACCTGGAGATCTAATTTTTAAAAAGGCTCTACAGATTACTAGCTTTTGAGGTCAGAGGGAATTGCAATGAATTCTGATCTGCTAGCAGCATAAACTAGCAGACCATATCCATGATTTTTTGTATCAACTCTGCTTGTTCTGCTTGTTGTCCAGTCGTCCAGTGCCTCTTAAAAGGATGATTTTGGATTAGAGCTGGGCAGTGATGGAGAACACATCACCCTGTTACAAAGGCTGTTGAAATGGTTGACCACCTATCCTCTCATCCCGACTCTACAAAATACATTCCTTCTCTCATACGTGAATTTCAGTTCTAGAGGAAGAGAACATAGCTACTAAAAAGACACTCCTACATTCCCAGAACTGGAAGAAATATAGAGATTCCCAAATGCCTCTCTCACTAATGCACCTTGTTTGGTGCCTAACGTTGTCAGTTTAGAGAAAAAGGCATAATGAGAAAATTATTCGGATGTTAGATGAGCTGAGTTACTCCCTGGATCTCTTGTTAGAGGAGCTCGGCCATTTATAATGATAAGTAGCAAAAGTTAACGGGGCCAAATTTGTAGCTGTGGTGGTATCTCTGTGTGCACTGAGTACCCATGATAGTCACCGAAGATACCATTGCAGCCAACAGATCCAAGACTGCCTTTTGGCTGTCTAGACACAAGTATCTGGTGGATTAGGTGAATTGCTTTAGAGCTGGCTGGGGATCAGATATCCTTGAAAACATTACATTGGAAGGAAAGTTGGGGCTGGACATCTACAGTCCAAATTCCAGCTCAGCATATGTCCAGTTTCAAAATTTGATATCATACTCATGTGAATAACTGAATTCAGGCAACCTGAATGCCACCCAAGATCTACAGCTAGCCAATAGTTTGAGGTGATTGGCTCATTCAGAGAACAGGCTGTTCATATCTGTTCACCCTTTTCTCCTGTTTGTGGACACCCTGTAGTGGTACCAAGGGAAATCCCATGCGTCTCTCTGTGAGAAATTTGGGATCGTGCTGGATATTTTTTAAGTGGTGTCTGTGTATCTCTCCTGGGGGTCCCTAAGCCATCAGCCAAATGTCTGTTGCCTTGCTAAATGAAGAGAAGTCCTTGGATAAGATTTCACATGTACAATATCAGATTGCCCACAGATAAAAGCTTCTCCTTCACGAAAGCTCTGCCTCTGAGCTCCCTCACTAAGCCATTCACAGGCATCCAGGGAGATTATGAACATGAATGAATGATGTTTGGCAGAGTCATGCTAACAAGTGCTAATGCAAAGGGCAGCTGCTAACCCAGAGGCAAGATTGAGCAGTGGCATGAGTTCTTTGAGTCTGATGGTGACAGAGCTAGGTGTACTGCAGGGCTGCTGTGTAAGGGATGGCCACTTGCCCTGATCTAATTGTAACTGATCACTCCACCTGCCTTCACAGCACCAGGTGAAGACTGCCTGGAGCATGTTCATTTTATTTTAGGCTGGATCCAGAGCTTGACTTTCACACCTCTTTAATTTTCTGAGGCTAAGGAACATTTGGTTGTTATCTTTGCAGTCTGTCGTACAGGTACATCTTGGAGAGGAGCAGCTCCAAGGAGCTCATTTTCTTACCAAATAATTTTAGCAGGTGGTTCTTTACTAGATTCCTTTGTTACAACCTATTCATAGATTAATAGAATGATCTTCATAGAATCACAAAATGATTCTGTGATAAAATGGATAGGTTGTATTCATAGAATATAATGGAATCTGCATTGAACAATAGAACCCATTCCTTGGGCTAGTCCTGCTCCATACAGTAAACCACTTGCATTTACATCAGAGAGGTCCTAAGTTACTGTGCTTTGACTACTCCACATCACTAATGGCTTTGAAGTGGCAGTATGTGATCCTGGGCACCACAGACCAGTTAGTGCAATATCAGCATCAGAATGACACTGAGAATCATAGAATCATTTGAGTTGGAAAGAACCCTTGAAGGTCATCTAGTCCAACTCCCCTGCAATGAACAGGGAATGACATAGAGCATGTAGCTTGATAGAGATGTATGCAAACTAACCCCGTCTATGTAAGTGCTATTACAGGGTCAGGAACTCAACTTCAGATCTTCATCTTTTAAGAGTGGAGGCACTAGTTGGAGTACATTTGTAGTGATAAATGTTGATGGCAGTTTTGCAAAGCCAAGATGTGTAGGGACACTAAGTTCTCCGAAGTGGTGTTTTTTTTTGGTGGTGCTTTGGTTGGTTGGTTGGTTGGTTGTTGGTTTTATTTCTGAGGTATAATTTGTATTGTCTCAAAGTTTGGTGACTTTGCCTTCACTATTTGAAAGAATTTCTGAGCCCCCTCAGTGAAAGGTAACTTTTCCAATAGGTCTTCAGTCCCTCTTGTTTCATCATCTCCATAGCTTTGTGTAAGGTATAATTCTGCTCTAATAAAATATAATTTTCCTTTTTCTCCTCCCTCACATTTTACTCATAAGACAAACTGCGGCGGGAGGGTAAGTAATGACTCTTGGAGCTGTCATTTGTAATCACTCTTGTGCCCATCCATTGGATCACTTGTTTCTCTTCTGTTGCATTTTCATTTAATTTGCACTACCATTGCTGCTGCTTCACAAATGCATTGAGAGCATCATCCCATTTGCTGCAGAGCTTGGCCCTCATGGTGAAGTTGTGACCTTCCCAGAGCTGGAATGTCCCCAGTCTGTCAATGCAGTATTGCATGATTAAAGCTTTAAGTGCTTCTCAGTAATTATCTCAACTTGCAGGAAAAAAAAAAAACTTCTGCAACCAAATGAAAAAACTTTAACCAAGGTGCTTTTGCCTGAGGTTTGGTTTGTACACAGTGGGGGAAACCATGCTGAGTAGCAAGGTTATTTGGTGGGGAGTTTGGACTTGGAGTAAGGTTAAATCTCTTTATTTAGAGATGAAAGCCATGTCTGCTGTTGCTTTCTTGCTGCCAAATTGCAGCAAAGTTTGGTAGAGCTTTAACCCCATAAAAATCCAGATGAAATGAGCCACAGTGCTCTGAGCAGTGAGGGAAGCAGGCTCAGGAAGGATTTTGTTTGGGGCTACTTAAAATGTAGGTCATGCAAGCAATAATGAATTTGAGTTGTGGTTTCTGATGGAAGTGGTCCACTACAGCACAGCCTCTTCCTATCAGCAACACTTGATTTTCCTGATACGGAATGGCTTTGCTCTCACCCAGCAATAGAAAACAAAGAGATAATATTTCCTTGGATGTGCCCTTTGGCCCGTCATCAGCAAAGCAGACAAAGTTTTTCAGGAGAAGTGGGCAAACTGTGAACACTCATCAACCAGGAATGACCTAGGAAAGCAAGCAATAGTTACAGGAGTTCGTGCTGACAAAGTCTTTTGTAGATCACAAGGGAAGGGTCAACAAGAGTATCCAGGAAGCGCATTCCTGCAACTAATGGTTAACTCCTTTCATAAGCTTGCTGGCTGTGTTTGGGGTAGGTCAGACCAATGTGGCTGAAACACAGGGATTTCAGAGACTCTGTGAAGTCTCAGTCTTTTTTAGAAGATGCCCAAGGAAGATTAGAAATACCCCTCAAATTAACCTGGTAATAAATTATTAAGAGGAAAACAGTGCTCCAGATCTCTCACCCAGTACTGGAAGGAAACTCAAGGGTCGGTAGCAACCTTGGTGACATAAAGCCACCCAGAAATTGAGCCCCATCCTTCTATGAACATTAGATTTACATTCTCTGTCACTGTGGAAGGCTGCTCAGGGATCTTTGGTGCTTCTCTACTTCAGTAGCTTCGTCTAACAACCAGTGTAAGTTATTTCACAGCCAATTTCCACCCTTTGTATGTGTGACAAGTTTGTCCATGAGCTTCAAGAGCTTTTCTCCTTTCCTGACATTTAATCTATTATTACAGAGAAGACCACAACTTTCTCTATTAATTGCTTCTATAAATTCAAATCTCACCTGGGCTGAACAAAAACCTGCTCTCGTGTTGCCCATGGGGCTACAAAGTGCCAGCCCCTAAGAGCTTTCAGCATCCCTAATGCAGAACACAACTGCCACCTACCGGCTGCCTTTCAAGAAGCCAGAGATGGGGGGACGTGAGTAGATAGTGAAGAACAAATTATCACCTATATCCGCTGAAGCCCATTCTTTCATGATTTAGGGATAACAAGTTTCAATGGGAGAAACTCAACCTGGGACCATGTTATCTTCCATCTATGGAAGCATCTTTGCCTGAGACACTTTGGTTCTTTGTTCCAAAGGCTTATTTTTGGTTTCAGGTCATGCAGCTGAAAGGATATATTTTTATGTTGAAATGATGAGAGTTTTTGTTGTTGTTGTTTTTCTGGGAATAATATTTGCAGCAGTGGGGCACTTCTGTAGCTGGTTTCATGAGAAACGAAAGGGGAGATTCAGCTTTCATAACATTAGTTGTCAAAAGTTAGCCTAGAGAATGCAAATTGATTCATTTTTCATAGAATCGCAGATTCATTTGAGTTGGAAAGGACTTTTAAAGATCATACAATCATAGAATCACAGAATGGCCTGGGTTGAAAAGGACCACAACGATCATCTAGTTTCAACCCCTCTGCTATGTGCAGGGTCGCCAACCACCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTCCAGGGATGGGGCATCCACAACCTCCTTGTGCAACCTGTTCCAGTGCGTCACCACCCTCTGAGTGGTGCAACTTCCCTGCAATGAACAAGGACATCTACAGCTCAGTCAGGTTGCTCAGAGCCTGGTAGTCATTACTGTAGTCATTAAGAGAGATGAACCCCTTGGTTACCCTAAGATGGATCTCTGTTGACTTCCATGCTCTAGGCAATAACTTTTAGACTATTGAAATTGGGGAATGACATCCTTACTCTCAGACTTGAGCTGGGATATGACCAAACCTCCTAACCTTAGAACTGTATCTGAGTGAGAAGGCAAAGGCCTTGAGTCCTTTGTTGAGAGGCTTGAGAAAAATGGCTCCATGACACCACAAAGAGTTTTGCTGCCAAAGGCTCAGGACAATTTTGCTTATCTGTGTGCAACAGAGAGTATGGGATGTACGAAAGGCATTTCCAAAATGACTAGGACGCAGCTTAGAATGAGTATGTCTGGACTTTGTGAACCATTTCCCTTTGCATGGGACATGGTCTAAACTGCAGCATGGAAAGATTTGGTTAGACAAAGATGTAGTGAGGAACAGACTGCAGAAGAAGGTGTTAGCAGCTCTGCTGTGGATTTTTAAAAAGCAGTTAAATAGGTATCTGTCAGGAACAGTGTAGATCCAGCTGGCTCTGGTTTGAGGCAATGATCTCCAGGTCCTTCACATCTTTAGTTTCTCACGATTTGTGCAGTGCACTAAGTCTATATGGATGCATACTGACTCTGGGGGTGTTTTTGCAAATATGAGCTTAACTTTGAACTCTAAATCTTAACTGAGGAGAATCTGAAATATGAATTAAAGCTTGAATCCACCTAGTGCATGAGCAGGGCTGAGTCTGAACTAAATTGTATAGTTTGAGACTTTTATTCCAGCTTTGCTCCAGGCTCCACCCTTCAAGCATCTTTGGCTTTTACATCACCTTCCATCCAGCTTTTGAAAAACATTGATTTTTTTTTGACCTCCACACTCCATCCAAACTGCCAAAGCCTCTCAGCTAGGTCTCACTGTCCCATAAACCTCCATGTGCTTCTCCTCCAG
Seq C2 exon
ACATACACTGGTTCAATACTGGTGGCAGTAAACCCCTACCAGCTTCTACCCATCTATTCACCGGAGCAGATCCGCCTGTACACCAACAAAAAGATTGGGGAAATGCCACCACACATCTTTGCGATCGCTGACAACTGCTACTTCAACATGCAGCGCAACAACAAGGATCAGTGTTGTATCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=54.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]