MmuINT0104573 @ mm10
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98098187-98102702:-
Coord C1 exon
chr7:98102550-98102702
Coord A exon
chr7:98098372-98102549
Coord C2 exon
chr7:98098187-98098371
Length
4178 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
CTGTCCCTTGCTGCTTGCAGACG
3' ss Score
9.04
Exon sequences
Seq C1 exon
GAACACTGGATATCCCCTCAGAATGCCACGCACATCAAGCCAATGCACCCCACATCGGTGCACGGCGTGGAGGACATGATCCGCCTGGGGGATCTCAACGAGGCAGGCATCCTTCGAAACCTTCTCATTCGCTACCGGGACCACCTCATCTAT
Seq A exon
GTGAGTACTACCCATGGCTACTCCTGTGCCGCACCCAGAGGTCCATACTCCTGGGACTTCATCAGCTGTGTTGTGGGTGCTCCATTTGAGGCCCCTCCCCTCCCTGGGTCCAGGCTCTGGGCTCTTTAGATCTAAGTCTGGGGCAGGAGTTGTTTATGGGCCTCAGAGGCTTGGGAACTGAAGGCCAGGTTGCTAGGGACAGGCTTAGCATTTTTCCAGTTAGGGAGCTGGGGGCTGTTACCCTGAAGCCTCAAGACCAGTGGAGGCAAGCTAAGAAGTATGAGTCCTTAGGAAGGAAAAAGGACCACAGACTCTCATTAGAACCAACCAGATCATCTTCCCTATGGAAACACCACTGGATCTTAGTGGAATGCAGAAAAGTGCTTCCATAGAGAAAATAATAAATTTGATCTCACCCAGCTGGGACATCAGGGACAAAGGTGCTTATGCCAGGCAGGACACACGCCCTGAAGACCTTTAGCAAACTGACTTCACCAAACCCAAAGCTTTTTACAATTATTGAGGAAACCAAAGACTTCTGCTTATTTGGATCATAAGATGATATTTATGGTATTAGAAATTAAAAAAGAAAGCTTAAGACATTTATTCATCAAAAATGGCAGGCTAGGTGTATCTAGAAAGCAATGTGACCAGATCTCATATCTGGAGTTGCAGCAACTTGTAACTCTGCAAAGATAGGAATCTTCTTGGCATTGGCCTCCTACTGATGAAAAGGGCCTTGTTCTGAGAATTATTTTTAAAATGAACTATTTATCGTATGTGCTTATGTGCGTGTGGGCTAGAGCCGCCACATGTGGAGGGCTGAGAATGGCTTTTGGGGGCCATCTCTCTCCTTTCACTGTGTTTTGAGGCAGGGTTTCTCTTGTCACTGTCCTGCATGCTCTATGCTAGCTGGCTTGAGAGCTTCCAGCCAACTCTCTTGTAGGAGTGCTGGGATTTCAGATGCGTCAAAGTTTTTACACAGGTTCTGGGACTCAAACTCTGGCCAACAGGCCTACACAATAAGAGCCTTAACCTCTCGGACAGTCTTGCTGGCCCTTTATGGTTAAGTTTTACCCAGATGTGTGTATTATAAATTGTAGATTTCCTTCTGACTGATTGCAATGGGACCTTCCTCACTGTGCCACAGGGGAAAGACTGTGTGTACTCGGACGGTGTGCATGTGTATACAAGTATGGGTGTTTATCTATATGTGTATACATTGACACACATGTGTTTGATGATAAGTACTTGTGTATACATTCAGGTATGGGATCAAGCACACATACGTGGACACATGTGTACATACCTTTACATGTGTGCACATATATATGTTCTTCCTCCACATGCAGAGTATATCTATTCACAGTATTCTGTCTTTCCCACCAGTCTCATCCTAGACCTCATTTTTTGGTGGCTAGTGTGACCCTGAGTGTTGACAGTTTGTTCCTTAGATCCCTTCTCTGCTAGTCCCTGGAGATAATCAGAGATGCACCCTCTCAACCCATGACTTTTAATCACTTAGTCACAGGACATCGCTCCTGTGTCCTGTATTCTGTGTTAGACAAAGGCCTTGAAACAGTCACCAAGCAAGCATCCAATAAAATGTACTTCAGAGAGCACATGAGGTACGAGACACACATAATACCCCCACTTTCTGTGTGTTTTTGTTTTTGTTTTTTTTGAAACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCTTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCACACTCCCACTTTCTGAAAGAGTTGGCTCCTAATGGCAAAGAGGCACCAGCTAGGTGAAAGGCACGGCAGTGTTGTCCAGCCTGGTGAAGCAGGAGAGGGAGGGGCTTTGGGCCTCAGGTTCAGTGGCTGCCCACCTTGTCTGCAAGATAAAGAGTAACAAGGCTCTTTTAGGAAGATGTATACCATGACCTGAGGTTGTAGGAAGCAGGAATGGGTCCCAGCAGAGGGCAACGCAGCGAAAGCCCACCTAGGCTGCAAATGGAGGAGAGACAGAGCAACCACAGGGACAGGAGCCCGATAGGGGGCTAGGTGGGGACCAGGAAGGACCTGGTAACCCAGAACACGGAGGCCAGCTGGGGTAACAGGGAGCAAGACGTGGAGGGCGCACCTGGGTGAAGGGCGTGGCAGTACTGGAGGCCAAGTTGAGTAGGCTGACAGTAGGTCTGAAGGAATGCTGGCTTGGGAGTCTTAGTGGCCATCATGTGGTGGCCTCTAGGAGGTGGGACATAGAGGAATCTTGCACCCATGAGGCCCTTGGGTTTCATGCAGAATGGAAAGGACCCTGGGGCAGTAGTGGAATAAGAAGGTACATCCAATAGCACCAGGAAGTCTTGGGAGTGTTGCAGCATCTCCATATTTCTTCCTGTCGCTTCCCTGCCATTGAGCTTCTCATGGTGACTCTGTAGGCTCGATCCTTGGGTCTGAAAGAGTAGCAGCTATCAGTCTTCTGTAGTTGCCAGAATGACCTTTCTCCAGCAGATTCCCCAAATGTCATGGCCTTTCACACTCTGATCCTCTACTGCAGTCCAGATGCTGGGGCTCCCAGAGCACCGATGCTGGGGGCTGTGGAGTGACTGGCCGTATGCTGGTGACAGGTGTCACATTCTTAAGCAAGTCTTAAGAAGGAAGTAAGGTGGCAGTTATGCCTCTACTACCCTTCAAGAGTGGCACCTTTGTCTCTGCAGTGGACCTGGGAAAGGGAGTGTCCCCTTTCACAAATAAGCAGACTGAGGCTGGCCAAAGCTATGTTCCTCGAGGCTGTCTCTCAGGTGGGGATGGGTTCCCCACCTGATGATGATAAGAGTCAGCTACATTCCACAGTTGCGTGGGATGGTGTGTAACAGAAAGTGGCCACAGGGTTCTTGCCCAATTGTTTAGCCTACGCCCAGGTTCCTGGGGATGCCTTTGTGGCCTCTTTTCTGTTGACTGGTTGTCTCTCTACCTGTTACTTTGTAACAGACCAGCTGTGGAGGACGGGTGAGTAGCATTGTAATAGCCCCTGGGAGGCTTGTTGGCTTGGCTCGGCTACTCCTCTTGGCTGGGCTACTCCTCTTGGCCTCCTTGCTTCATTTCTTTTTCTGGGAGGCAGAGGGGACTCTTGGCACTGAGCTGAACGGTGAAAGCTAGTCTTATGTGCTCCTGGCTGCTTGGAAGAGTCGGCTTAAGACTAAAGGAAGTTCTATGCTCTGGAAATGGAGTCTCGTGGCTTAATCAGTGCTTCTCTGCACAGCTCCCCTAGCCTGGGCTGATTTCCCTGCATGCCCTGAATGGTGGATGCTCTGGGATCATGCACGGAGTCCTGGAAAGGTGGTAAAGGTTGGAGAGACAGCGGAGGCTGCTGCCTGCCCTGCGCAGACACATTTGTCTCCAGCCTTCCTAGGCTCCAGACATCAAAACATCTATCACCGACAACAGGCGAGGCCTGACCTTTTCTGGCTTGGGGTGAGGCGGAAGGAAGGAGGAGTAAACCCATGCTCTCCTGACGCTTCTCTGCGTGACAGGACCCAGGGTACAGCCGGACATCTTGCCTGTGCTCTCATACAGCCTGAGGTCCCCAAACTGAGACAGACCTGAGCAGGCGGGCTTCAGGTCCCCATGCTCCATCCACAGGGCACAATAGCCACTCTGTCCTGGGTGGAGCTACAAAGAAAGTAGCCACCCAGCCCCAGCTCCTTCTGTACCACATTCCATCCCCAGCCCTCTGCTCTGCATGACTTGGCCCACTCATAGCTTCCTACCATCCCAGTCTCCCCTCAGGACATGGTCCAGTTTTTAAATCTTGCTCTAAAAGTCTTAGGTACAGAGACTGGGGCTAAAGGAAAGAGCCAGTATTTGAGCTGTCTCTGCTTTGTGCTTTGAATCTGAACAGTCCCATTGTACAGATAAGACAATGCAATCCAGGCTTGGGGACCTCTGGCTGTCTCCTCCTCCTTTCACCAAATGTCTCTGAGCCAGACCAAAGGCCAGTCTGAGACCCTTCATCGGCTCCTGCTGTGTCTGTGGACTCCAGAGCTGTGCAGGGCAGAGACCGTCGAATCCCCAGCAGACGGTGCAAGCCGCTGTCCCTTGCTGCTTGCAG
Seq C2 exon
ACGTACACAGGTTCCATCCTGGTGGCCGTGAACCCCTACCAGCTGCTCTCCATCTACTCGCCAGAGCACATCCGCCAGTACACCAACAAGAAGATAGGGGAGATGCCCCCCCACATCTTCGCCATTGCTGACAACTGCTACTTCAACATGAAACGCAACAACCGGGACCAGTGCTGTATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761:ENSMUST00000107128:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(38.4=54.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types