RnoINT0097398 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163049756-163054999:-
Coord C1 exon
chr1:163054847-163054999
Coord A exon
chr1:163049941-163054846
Coord C2 exon
chr1:163049756-163049940
Length
4906 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
CTCTCCCTTGCTGCTTACAGACA
3' ss Score
8.04
Exon sequences
Seq C1 exon
GAACACTGGATTTCCCCTCAAAATGCCACGCACATCAAGCCAATGCACCCCACATCGGTGCATGGTGTGGAGGACATGATCCGCCTGGGGGATCTCAACGAGGCAGGCATTCTTCGAAACCTTCTCATTCGCTACCGGGACCATCTCATCTAC
Seq A exon
GTGAGTACCAACCATGGCTACCCCTGTGCTACACCCAGAGGTCGCGGCTCCTGGGACGTCATCAGCTCTGCACCGGGGTGCTCCGCCTGAGGCTCCACCCCTCTTGTGTCCAGACTCTAGGCTCTTTAGAACTAAGCTTGGGGCAGTAGCTGTTATACTGCAGGTTTATGGGCCTCATGGGCTTGGAAACTAGAGGCCAGGGTTGCTCAGAGACAGGCTTAGCATTTTATCAGTGAGGGAGCAGGGGCTACTGTCCTGAAGCCTCAAGACTAGTAGAGGCAAGCTAAGAAGCATGTGTCCTTGGGAAGGGAAAAGGACCGCAGGCTCTCATTAGAACCAGCCAGCTCACGTTCCCTATGGAAACACCACATGGATTAGTGGGATACAGAAAAGTGCTACCATAGAGAAACAAATAAATTTGGTCTTACCCAGCTGGGACATCAGGGACAAAGGCAGCTTATACCAGGCAGGGCACACACCGGGAGACCCTTAGCAAGTTGACATTTCAGAGGTTTCATCAAACCCCAAACCTTTTACAATTATTGAGGGAGCCAAAGACTTTTGTTTATTTGGGTCATAAAGTGATATTCATGGTATTAGAAATTAAAACAGAAAGCTTAGTTTATTCAGGCTAGGTCTACCTAGAAAGCGATGTGGCCAGACCTCATATCTGGAGCTGCAAAGATTTGTGACCCCAGGAATCTTCTTGGCATTGTCCTCCTACTAATGAAAAGGGTCTTGTTTTGAATAATAAATAGTTCATTTAAAAATGAACTCTTTATTGTATGTTCTCAGGGGCATGTGTGCTAAAGCTACCACACGTGGAAGTCTGAGAACAGCTTTTGGGGGCTATTTCTCTCCTCCCGCTGTGTTTTGAGGTAGGGTTTCTCTTGTCATGGTCCTGCATGCTCTAGGCTAGCAGGCTTGAGAGCTTCCAGTCAACTCTCCTGTAGGAATGCTGGGATTACAGTTACGTGATCCTGCATTAAAGGTTTTACACAGATTCTGGGCCTCAATCTCTGGCCCACAGGCCTACACAGTAAGAGCCTTAATCTCTGGAACAGTCTTGCTGGCCCTTTAAGACTCAGTTTTGTTTTGTTAAACTTGAGTATTTCTTATTTACATTTCGAGTGCTATTCCCTTTCCCGGTTTCCGGGCAAACATCCCCCTAATCTCTCCCTCTCCCCTTCTTTATGGGTGTTCCCCTCCCCCTCCTCCCCCCATTGTCACCCTCCCCACAACAATCTAGTTCACTGGGGGTTCAGTCTTAGCAGGACCCAGGGCTTCCCCTGCCACTGGTGCTCTTACTAGGATATTCATTGCTACCCTATGGGGTCAGAGTCCAGGGTCAGTCCATGTATAGTCTTTAGGTAGTGGCTTAGTCCCTGGAAGCTCTGGTTGCTTGACATTGTTGTACTTTTGGGGTCTCAAGCCCCTTCAAGCTCTTCCAGTTCTTTCTCTGATTCCTTCAACGGGGGACCTATTCTCAGTTCAGTGGTTTGCTGCTGGCATTCGCCTCTGTATTTGCTGTATTCTGGCTGTGTCTCTCAGGAGAGATCTACATCCGGTTCCTGTCGGCCTGCACGTCTTTGCTTCATCCATCTTGTCTAATTGGGTGGCTGTATATGTATGGGTATGGCTCAGTTTTAACCAGATATGTGTACTATAAATTGTAGATTTCCTTCTCGCTGATTGCAATGGGACCTACCTCACTGTGCTCGCAGGGAAAGACTGTGTGTACTCAGATGGTATGCATGTGTGCACATGTATGTGTGTACATGTATGTGTGTATACATATACAGGCACACACATGTGTTTGATCATGAGTACTTGTGTATACATTTGGGTATGGGACAAACACACATGTGTGGACACATGTGTATATACCTTTACATGTGTGTACGTAGATGTGTGAACTTTGGTTCTTTTTCCACATACAGTAGTATATCTATTCACAGTATTCTGTCTTTCCCACCAGTCTCATTCTAGACCTCATTTTTGGTACTGTGGCTAGTGTGGCCCTGGGTGCTGACAGAGTGTTCTTAGCTCCCTTCTCTGCTAGTCCCTGGAGATAATTGGAGACGCTGCTCTCTCAGCCCATCGCTGCCAGTCATGTAGTCACGTAACGGACAGTGCTGCTGTGTCCTGTATTATGTGTTAGACAAAGGTCTTGAACCAGAGTCACCAAGCAAGCATCTAATAAAATGTATTTCAGACAAAATGTTGGGTGCAATGAGACACACACAGCACCCCCACTTTCTTAAGGAGTTGGCTTCATATGGCAAAGCAACACCAGCCAGGTGAAGGACATGGGCAGTGTGGCCTGGTGCAGCAGGCCAGTAGGAGCTTTGGGCCTCAGGTTCAGTGGCCACCCACCTCGTCTGCAAGATGAAGAGTTACAAGGCTCTTTTAGAGAGATGTATACCATGACTTGAGGTTGTAGGAAGCAGGGATGGGTCCCAGCAGAGGGCAACACAGTGAAAGCCCACCTAGGCTGCAAGTGGAGGAGAGATGGAGCAATCGTGGGGACAGGAGCCAGACAGAGAAACCAGATGGGGAACAGTAAGGATCTGGTGGCCCATGCCAGGGAGGCCAGCTGGATGGTAGGCTGGTAACAGGGAGCAAGGAGTGGAGGGCTCACCTGGTGAACGGCGTGATGGATGGTACTGGAGGCCGAGTGGCCATCATGTGGTGACCTCCAGGAGGTAGGACACTGAGGGATCTTGTACCCATGAGTCCCTGGAGTTACATGCAGAATGGAAAGGGCCCTGGGGCAGTAGTGGAATAAGAAGGCACGTCCACAGCACCAGGAGGTCTTGGGGTGTTGTAGCATCTCCATATTTCTTTCAGTCACTTCCCTGCCATTGGGCCTTTTAGGGTGACTTTAGGCTGGATCATTGGGTCTGAAATAGTAACAGATATCAGTCTTTTATTATTGCCAGGATGACCTTTCTCCAGCAGATCCCCCCAAATGTCATGGCCTTTCATACTCCTGTTCTCTGTGGCGGTCCAGCTCCTTTCCCCAGTCCCCGCACTGGAGGATGCAGAGGTTCCTTGGAGCACCAATGCTGGGGGAGGGGCTGCGGAGTGACTTTATGGAGCCAGCCTCTGCCCTGTGTTGGTGACAGTGTCACATTCTTGAGCAAGACTTAAGAAGGAAATAAGGTGGCTCTTATGCCTCTGGTACCCACCAAGGGTGGCACCTTTGTCTCTGCAGTGGCTGTGGGAGTGGGCAGGGAGCACCCCCTTTCACAAATAAGCAGACTGAGGCTGGCCAAAGCAATGTTCCTTGAGGCTGTCTCTCCGGTGGGGATGTGTTTCCCATCTGGAGATCAGAGTCAGCTATATTCCACAGTTGTGTGGGGTGGTGTGTAACAGAAGGTGGCCACAGGGTTCCCACCCAATTGTTTAGCCTAGGCCCAGGCTCGTGGAGATGTCTTTGTGGTCTCTTTTCCCATTGACTAGTTGTCTCTCTACCAGTTACTTTGACTAGTTGTCTCTCTACCGGTTACTTTGACTAGTTGTCTCTCTACCGGTTACTTTGTAACATATCAGCTGTGGAGGGTGGCTGAGTAGCAGCCCCTGGGAGGCTTGTTGGCTTGGCTGGGCTACTCCTCTTGGCTGGGCTACTCCTTTTGGTCTCCTTGCTTCATTTCTTTTCCTGTCGGGGCTCTTGGCACTGAGCTGAGCTGTAAAAGCTAGTCTTAGGTGTTCCTGACTGCAGTGCTTGGAAGAGTCAAGAAATGGGGTCTCTTGGCTTAATGAGTGCTTCTCTGCGTTGCTTCCCGGGCCTGGGCTGGGTACCACAGCTGACTTCCCTGCATGTCATACTGGGCTGAGCTGCTGGGGAATGTGGATGCTCTGGTGTCATGCACTGAGTCCTGGGAAGGTGGTAGAAGTTGGAGGGACAGCCAAGGCTGCCACCTTCCCTGTGCAGACGCATCTGTCTCCAGTCTTTCTAGGCCCGAGACATCAAAACATCTATCACCAACAACAAGTGAGGCCTGACCTTTTCTAACTTGGAGGAGGGGGAGAAGGGAGGGGGGAGAGGGAGGGGGAGGGGGAGAAGAGGGTGAGGGGAGAGGGAGGGGGGAGAGGAGGAGGGAGGAGGGAGGGGGAGGGGGAAGGGAGGGGAGTTTGGGGAATATGGGAGGAGGGAGTAAGGAGGAGGGTGGGGGGAGGGGAAGAAGGAGGAGGGAAGGAGGGAGGAGGGAGGAGGGGGAAAAGGAGGAGGGAGGAGGAGGGAGGAGTAAACCCATACTCTCCTGACGCTTCTCTGTGTGACAGGATCCATCTTGGCAGTACATCTTGCCCCTGCTCTCATACAGCCTGAGGTCCCCAAACTGAGACAGGCACGAGCAGGCAGCCTCAGGTCCCCATGCTCCATCCATGGGCACAGTAGCCACTCTGCCCTGAGTGGAGCTACAGAGAAAGTCACCATCCAAACCCCAAATCCCGGCTCCTTCTGTACCACATTCCAGCCCCAGCCCTCTGCTCTTCATGACTTGGACCATTCATAGCTTCCTGCCATCCCAGTCTCCCCTCAGAACATGGTCCAGTTTTTAAATTTTGTTCTAAAAGTCTTAGGTACAGAGATTGGGACCAAAGGAAAGAGCCAACCTTTGAATTGTCTCTGCTTTGTGCTTTGAATCTGAAAACACACCATCTTTCATTTTCACAAGAACAGTTCCGTTTCACCCATAGTACAGATAAGACAATGCCATCCAGTCTTAGGGACCTCTTGCTGTCCCCTCGTCCTTTCACCAAATGTCTCTGAGCCAGACCAAAAGCCAGTCTGAGACCCCCCATTGACTCCTACCGTGTCTGTGGACTCCAGAGCTGCACAGGGCAGGCACCTTCCCACACCCACCAGACAGTGCGAGCTGCTCTCCCTTGCTGCTTACAG
Seq C2 exon
ACATACACGGGTTCCATCCTGGTGGCCGTGAACCCCTACCAGCTGCTGTCCATCTACTCGTCAGAGCACATCCGCCAGTATACCAACAAGAAGATAGGGGAGATGCCCCCCCACATCTTTGCCATTGCCGACAATTGCTACTTCAACATGAAACGCAACAACCGGGACCAGTGCTGTATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=54.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]