GgaINT0105041 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75824630-75826141:-
Coord C1 exon
chr1:75826067-75826141
Coord A exon
chr1:75824796-75826066
Coord C2 exon
chr1:75824630-75824795
Length
1271 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TATTTTGTATTTTGTCCTAGCAT
3' ss Score
6.8
Exon sequences
Seq C1 exon
GGTGGTGAAGAAGGTGAATACTCCCTTACAGCCTACATTGTGGCAGCATTGTTGGAGGCTGGACACTCTGTTCAG
Seq A exon
GTAGGTAGTTGATGTGGTTATCCTTTTTTAGTCTGGTCAGCCACATGTCAAACAATGAACAGGTCTTTGTACTCACATCAATTTATTTTTAACGTCTTAAACTCGGGTGCAGTATGGTGAGCACAGGAATCTTCTTCCAGAACCCTGCAGTTGCCATAAGTGTGATTGGTGTTTATTTGTCCAATTTGTGAGGATTCATCTGATTGTGTAAAATCCCTGAGGAATCCAATTGTGATGAACAGTAGTTGTCCATATACGTGCATAATCCATATTGGATTTACCTACTCCATTCAGAGTCCAGTCTGAAATTCACTCTGGATTTGCCCAGTCCCAAATCCAAGATATCCAAATCTCCAGTTCTACAGACCATCTCTGTACATTTACATCCATGTTGTGTGTCATTGTTAAAAATGAAATAAAATGATGAGCCTCCTGGTTGGAATACTTACTAGGTATGGGAGAATGAGAACGGAGTTTTGTTCTCTCTAATATACTTCTTGAATGTCCTTGAGACCCTGACCTGATTATTTGTTCTTCTGTAAAACAAGGACAATTATTTGTAAGAATGGGAACAATTATGTGTTCTAAGCATGCTGAGTTTTACAAGACCCTCATATACTGTGGGATGGGGCATAATTTACATACTTAAGGTAGACAAGACAAAAGCATTGTGCAGCACTGAATAGTTCTGCACCACTGAGGGCTTAGTTCCCAATACCTTTCATAAGAAGCTCCAAAGCCTGGTGCCAACCTCTGTAAGTGAGACAGTATAGACAAACTGCTACTATAGTTATTAGTATGCTGGTGATACCTAAGCTGAACCAGGGCTCACAGAGGTAATCTATAGGGACAAAAGGTTGAAGAGTTATCTTGATAGCTATTGCTTGCAAATGAGTAATAACACCCATATGAGAGAGCTTGCTTCATCGTGACTTTTCAGTACACTTTACGTAACTCTGTAAAACTGATCCAATTTTCTAGATGTAGCAACTAAGGGTGAAAGGATTGCCTTGGAAAAGATCATCTCACAAGTCAGGAGAAGGAACAGTGCTCTGTTAGTTCTCCAAATGAAAGCAGAAACAAAGTAGCACTGCTGCACAATCATATTTTAAAAGAGACACATTGTAAACCCTTAAACATAGAATTGATTCTTTGTATTTTAGCATGAAGAATCAGATAGTAGCTTGAGATGTGATGAAGGTCTTTAAAGAGAAGCTGAGATGCAAACCAGAGTACCTGATAACCCTACTATATTTTGTATTTTGTCCTAG
Seq C2 exon
CATCCTGTGGTTTGGAATGGCATGAACTGTTTGGAGACTGCATTTAGCAATGGGGTCCACAACCTGTATAACCACGCCCTCTTTGCCTATGTTTATGGCTTAGCTGATAAACAGGAAAGATACCAATACTTTCTTGAGAAGTTAGATAAAAGAGCTACCAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(9.6=100)
A:
NA
C2:
PF076789=A2M_comp=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGAAGAAGGTGAATACTCCC
R:
TCTCTGGTAGCTCTTTTATCTAACTT
Band lengths:
238-1509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]