GgaINT0105047 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79457667-79459377:-
Coord C1 exon
chr1:79459306-79459377
Coord A exon
chr1:79457770-79459305
Coord C2 exon
chr1:79457667-79457769
Length
1536 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TTTTGTCTTGCCGTTTCCAGCTC
3' ss Score
10.73
Exon sequences
Seq C1 exon
CTTCAATATCAAGCTTCTGTTGTGGATCATGTGGACATCAAGAATGACCACGTCTTCTTCTACCTTCAGAAG
Seq A exon
GTAGGTTTGGAAGTGTTTTCCTTGTTTGAACTTCCAGGTTAACAAAACCTAGGCTCCAAAATAATAAAAAATGTCATCAAAAGCAGATTAGGAATATACATCTTGAAGATGGGAAGGGCCTTAATTCTGCCCAACCTCAAGTAAGGAAAAAAGCTATATAGAAATATAGTAGTTGTAGGCTACAGTGAAGAGATTTGTTATTGCTTTCATGAAAAATACTTCGATTAAATAGCATTTCACCAACACTGCTAAATTGCATTCTGTATTGCAAAAGTTCAGTCTACATAATATTTCTCAGTGTCTAAAATGATGCTTTTCATGAGTAGGTCTGAGTGTTTCACAGGGTGTCAATTATTAGCCCTTCCCTTTTAGAGAGAGTGATGTATAAAAAGAATACTTGTCCCACATCAATGAAATTAACAAAGGGAGTGAGAGAGGAAAAAGATGAAAATCATAGAATGACTTGGGTTTGGAAGAGATGTTAAAGATTATTAAATTTCAGCCCCCTGTCCTGGACTTACATGGCTGCCACGCACTTGATCAGGCTGCCCAGGGCCTCATCCAACCTGACCTTGAGTGCCTCCAGTGATAGAGCATCCACAGCTTCTCTGGGCAACCTGATCCAGTGCCTTAATACCTTCTGAATGAATGATTTCCTCCTAACATCTAATCCAAATATCTTCTATTTAAAACTGTTCTCCCTTGTCCTATCGCTATCTGCCTGTGTAAAAAAAAAAAAAAAAAAAATTAAAACAGAAGGGATACTCCACAAAATACCAGAAACAAAAGAAGGAAGGAAAAATAAATATTAGTGATATCTACTTTTCAATCAGTAATATTTATCAGTTGATCGGACTGGAGTCAATATTCTGAATTCATGGAGAACCTGAGACTTTCGAAATGTGAAAGCTGTACCCAGCACAACACAAGTTATACAGAAAGTTCTCCAGAGCTTCTGTCCATTTTTCCATTTCTATAATGAGATCAGTAAGTTAAAAACAAGAATAAATGGAGTAGAAAAAGCAGAGGCACAGTCCCAGGCATGCAGAAAAAAGCCTGATGCTAAGAAAAAATGAGCAAGAAGGAAAGTTTGGATCTTGCTGCAAGGGTATGGAATAAAGAACAAAATCGTAGGAGAGGCTGAAGATTTTGAATTCAGTGTGTTTAGAGAGAAAAGTGGGAAGTAGGTTTGCATAAAGGTGGTTATAACTGTGAAAGGTCAAGGAAAGAAGCTGTTGGCAACTTTTAGTGAGAGGATGAATAGCGGTATGTTGAAAACCTCAGTAAATATGTAATGCTTTGGTGTAATTAGCAATGGAAATGTGAAAAAGAGAAGAACACAGAAGTTTTGCGACAAAACATATTTCATAACAGCATTTAAACAGTTCCTTGACTTGACTTGAAGTTTACAATCTTGAGAGGACTGTAGAATGGTACTTTGTCAACCAGTCTGACCCCAAAAATGTAACTGAACATTACGCATGGGAACAGATATGAAAAGAAAAAGTCTGCATCTTTTTGTCTTGCCGTTTCCAG
Seq C2 exon
CTCTCCCAGAAAGAAGTCAGCTTCTCCTTCAGTGTAGAACAAAGTCTACCTGTGTCAGATATCAAGCCAGCACCAGTACATATTTATGATTACTACGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(25.8=100)
A:
NA
C2:
PF076779=A2M_recep=FE(38.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]