MmuINT0102596 @ mm9
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121836563-121837535:+
Coord C1 exon
chr6:121836563-121836631
Coord A exon
chr6:121836632-121837432
Coord C2 exon
chr6:121837433-121837535
Length
801 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
TGTTTTCCTCTCTTTCCCAGGTG
3' ss Score
12.22
Exon sequences
Seq C1 exon
CTTGAAAGATTAGAGCACGTGAGCAGAACAGAAGTGAGCAACAACAATGTCTTAATATATTTGGATCAG
Seq A exon
GTACGATTCCTTCCTGCCTCCTTAGACATATTGAGGTTGACATTGCTTGATCTATGTGGGTCAGGTGAGGGTCCTTCCAATCTTCCTATAGATGCTGAGGTGAGGTTTCTCCCTTGATGTGTCTATGTGGGAAGCACATAGGAGAAGAGAGGCAATTTTAAGGAACCCTTTAAAATTACAGGCTCAATACCTCACACTACATGATATTTTGATTTCTTTTCTCTGGCCTGGACACATGACTCAGCATTTAAGGGCATATACTCCTCTTGCAGGAGACCAAAATTCAGTTCCCAGAATTCATACCAACTCACAACTGCCTGTAATTCCTGTCCAGAAGATCTGATTCCTTCTTTTATGATCCATCAGTACACACACACACACACACACACACACAAACACACACACACAATAATAATAATAACTATTATTATTATTATAACAAAAATTAAAATATTTAAATATTATTTCTTCATTGCTGGCTTTCCTGAGACCTCACATAGGGTCTCAAGTGAGCAAATCAAATGGTTTACCACCTCTTAAAATGGACAAAGTCAAATCTCATACATTAAGGAGGAATATGAACTTTTGGAATGGTTTGATAGACTGGAAAAGATTCACCTAGGAAGCCTCTACTTCAGTTTCCCCAGCCACCAGTTTGAAATCCATATCACCATATCACCATCCACATAGGTGAACAGTTAAATAAGACCATAACTGTGAGGTTAAGTGCTATCCAATGAAAAACTGAAGAAAAACACTAGTTCCTCTCATGAGTCTGGATTGTTTTCCTCTCTTTCCCAG
Seq C2 exon
GTGACCAATCAGACACTGGCCTTCTCCTTCATCATTCAACAAGATATCCCAGTAAGGAACCTGCAGCCTGCCATTGTGAAAGTCTATGACTACTATGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(25.0=100)
A:
NA
C2:
PF076779=A2M_recep=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: