HsaINT0135686 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9303240-9304268:-
Coord C1 exon
chr12:9304200-9304268
Coord A exon
chr12:9303343-9304199
Coord C2 exon
chr12:9303240-9303342
Length
857 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACTCCCACTTTTCCTTTCAGGTG
3' ss Score
12.08
Exon sequences
Seq C1 exon
CTTGAAAGATCTAGCTCTGTGAGCCGGACAGAAGTGAGCAACAACCATGTCCTCATTTATGTGGAACAG
Seq A exon
GTGAGGGCTCTGACATCCTGGCTGAGACTACATATGGGTCGTCTTTCTAAGTGAGTCTCTTTACTAGAATAGTCGGTAACATGAGGAAAACAATCATTAGTAATGCCCTTCCAGAAAGGTTTATCTATTCCAAGAAGAATAAGAGGGGAAACCTTTGAACTCCATGTAGTGTTCTGTTCTATTTTTAATTGTGTTAAAATTGGAATATGAATATTTCTATGAAATTTAAAGTACAAAATCAATAGAAAAAAGGTGTACCATGTATTCCTGTTGTTTTAAAGGCCCCACTCCCTGACGATATGAATAAATATTAAACTTGAAGTGATAAATCAATAGGACTAAAGGTTATCATGCATTCCTGTTATTTTAAAGACCACCTCCACAAAATGAATAAATATGACCCCAGTGGTTGCCTAATGATAATGTTAACATTCTAAAATGTCACCATAAAATAAAATGAGGATTTTATGAATATTATCAAATATGACCATAAAACAAAGAAAATGTTTTATGTATCCAAACAGAAAGAATACTTCGTTGTTTTAATTACAGATTGTATGAAACCATGTTTCTCCAGCTTAGAACACATTCACATGGGCCCAGAGAGTTAATCTCATAACAAGGGACTACAAAAGAATAGGGTTGGCTCAGTTGTTTAGAAGAAAATCTGTGAAAATTTGTTGACTGTAAATAGAGTTCCCAAGGATGCATTCTAAAACCCATCTTGACATCCACAAATGTCTGGTCACCTAAAGACACTGGTGAAAAAGAGTCAAAGAACAATAAGAATATGTTTTGCTCATGGGAGAAAGAAGGAGGTTTTCTAGGTTCTTGATTACTCCCACTTTTCCTTTCAG
Seq C2 exon
GTGACAAATCAGACGCTAAGTTTTTCCTTCATGGTTCTGCAAGACATCCCAGTAGGAGACTTGAAGCCAGCAATTGTTAAAGTCTATGATTACTATGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(25.0=100)
A:
NA
C2:
PF076779=A2M_recep=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)