GgaINT0106890 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:183383626-183386320:-
Coord C1 exon
chr1:183386108-183386320
Coord A exon
chr1:183383658-183386107
Coord C2 exon
chr1:183383626-183383657
Length
2450 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
GAACAAGCAATTTTTATCAACTT
3' ss Score
-9.4
Exon sequences
Seq C1 exon
ATTCGTCATGAAGTTAGCTTTAAAAATATGACTCATAAGCTGTGCAGTGACCACTGCTTCAATAGATACAGGATGGCAAATGGTTTAATAATGAATTGCTGTGAGCACTGTGGGGAGTATTTGCCCAGTAAAGGAGCTGGAAACAATACTCTTACTATTGATGGTCAGCAGAAAAGATTCTGCTGTCAGAACTGCGTTGGTGAATACAAGCAG
Seq A exon
GTAATTATTTCTTAACCTATGAATTTAATTGAAACAAGCATTAATACTCATTAAATGTATGCTATTATTTGGAACACGGTTTTTTAATCTTCAAGTCTTAAGTAACAAAAATTTCTAAAAATGAAATGAATGCAAGAATACAGATGGAGGCAAACTAACCGAAGTGGGTCTTTTACTGTTGGCTTTCTTTTGATGTTACTGTAATAACAGTACCTATTGATTCTAAACCAGATATAATTGCAATTAACCCTTCTCTTAATTTCTTACTTTCTAATGGGTGCCTCATTTAAGAGTGTATTAATAACAAGCCTGTCATGCAAGCTTACTAGTCCCTAAACAGTGTCCTTTTCTGGATAGAAAAGCTGGCTTGTGTGCAATTGAAACTTTGAAAAATACACAGGGCATGTAGGTTGGATGTTGCTGTGTGAATAGCCTAACACATTGACTGTATGCCTATACTGTGTCTAATCTCCTTCACTGTACAGCGTAGGATTTTGAAACTGATAGTTACTTTCATTGTTCTGTGTCCTAAATTTTCTCTTTTCATTTTTACTTGGTTTGGGTTTCATTTATTCTTATGCTTAAAAAATAATTCCAAATCAAGGAATCTGATGGTGAGTAGTGATGCACTTTACATTTTACAGAGCCATCTTAGCTCTGAACCAGTGCTAACACTGGTTGGAAGGTTTAAATGATAATCAGAATATTTGAAATATTAAATACTTTGGGGGATTATGTGCAATTTGGAGATTATCTTTTTTCTCTATATATACTGCTTTGTGTTTCTAGGAATAGTACTCCGAAGTCTGAAATTACTGTTTTACTAGGAATTAATTTCTTTACCTGATTTTAAGCTTATGCTTGACTATGTGAGTGGCCCCAGTACTGCACATTGCTTTGGCTTTGTTCTTCATCTCCTTCCGTTTTTAAGAAACCAGTGACCCAAGAGAAAAGTGAAACCAGCACTGGATGTTTATAAGTTCCATAATGTTGCATCATGTGTGTTTGCATTTTCTCTTAGGACATTCAGTTTTGCTACTTCTGGGGTTGTCTGTTCTTATGTATATGCTATGTGCAAACAGCAATACTGGAAACATGCGTATGTAAATAGCGTAACTGAAAACATAACATGAGCATTGTTCTTTTGTCACAGCTAATCCAAAAGGGACAGGATAGGTTTCCAAGATACTAAAAACATAGGCATGCCCAGAAGCCATGGGAAGACTTGAAGAAACGTTGAATACTGTCTCTCGAAGAAACAAAAAGGCATGAGATTAACTTTGAACTTGAGACATTCTCACACAACCAGTATAACATGCACTGCATATGGAATTAAGAAATGAACGTGGAATTTTGAGAGGTTGAATGATAAATCTGTACTTCCATTACAGACTGTACTCTGTTCAGATGTTTTTTTTTACATTGTGTTTAGATGTGTATTTGAGACTGGGAAGGGTGTGTGGGTAGCAAGTTGTATATTCTAGTTTGATTTGGGGAAGAGGAACAGTTTGCAGAACATTGGAATCTTCGTAAGTAGTGGAGGAAATTGCCCATTATTGTGCGGATCCTTAAGAGAAGCTTTAAAATTCAGAAACGCACACTGTTTTGGTGCATTCAGTCCTGACAGGGGGCTTTATTCAAACAAGTTCTTCATATTTTTTTTCTTGGTGCTGGGAAACTGTAACAGGCTGTGAGAAGCTTAAGTCTAGTGATTATGTACATCTTGTTTGGACTGGTGATTAAATGTAATTAATCACTGGTAGATTTCAGATGCTCACGGAGCATGAGATTTTGGGGGTGTTTTTAAGAAAACTAATTTTGAATTAGGAGCTTTTTTAGTATGTTGTTGTAGGTGTCGAAGTTGCTCAGGATGCAGCAGTTAGTTTTTCAAAGTAACTAGTTGTCTAGCGAGGTTCATTTAAGCTTCCATTTTCATTAAGGTTTTTGAACTGAATGTATTCAAGGAATTCTGTTTTTGAAAAGGAATTTAGATTTTGGAAAACGTCACTGAAAACGCATTGGGCCGTGATGGGTAAATTATAGGTTTCTTTCTTCAGTAGTAACATGGAAATCTTTGATTCAAATATGGCTGTTAAGGGAAGGAGAGAATATGGGAGTGTTGCTGTTACATACTGAAATAAACACTGGAGTCAATAATGTAGGAAAAGTTGATGTCATTTGATTACAGTGTTGTTCTATACAACTTGTTACTGTGTGTCACGTAAGTTTCAGCAAATGTTTTCTTACCTTACTGTAAAATAAATAGGTTTTGCTGGTATGAGCTTTGTGTTAAGCAGTTTATATTGTAAATGTCATAAGACTATCACTATGCTTTACTTTTGTTGCAGCAATAAACAAAAACTGGTTTTTATTACTTGTACCTATCTATATACCTCATCCCTATTTTTTGAATAAATATTACACTGATTTGAACAAGCAATTTTTATCAA
Seq C2 exon
CTTATCATGGACAGTTTTTCTTCTTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000027684:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]