GgaINT0108367 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3E8]
Coordinates
chr1:136651261-136652428:-
Coord C1 exon
chr1:136652277-136652428
Coord A exon
chr1:136651428-136652276
Coord C2 exon
chr1:136651261-136651427
Length
849 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GAGACGTTTTTCCTCTACAGGTT
3' ss Score
9.52
Exon sequences
Seq C1 exon
CAAATTGCCTTCAAGAACCTCGTTCAGCGAAATCGTCAGGCAGAACAGCAGGCAAATCGACCGCCACCTTCCAATTCTGTCATCCATTTGCCATTCATCATTGTGAACACCAGCAAGAAAACAGTGATCGATTGCAGTATTTCAAATGACAA
Seq A exon
GTGAGTTAACAAAGCTTTCTTTCTGTCTTTTGGTGCGGCTATGAGTTCTGTGTCTATACTGAAGAGTTAATCTACATTTGTTAGAAATGGAATACAAATAAATCGTGCCTTTTATAGATTGCCAGTGTGCAATTAAACTTAGCAATGTTGAATAGAAACAGAGTTTTATAAAGCGTTGTAATAAACAGAATAATATTGTTCAGATTTAGTAACATAAGATTTATGAACTGTCCAGAAATTTTAGAAGCCAAGTAAGGCAGCTCTACTTAAGTTGTATACAAAGCTGCATTAGCAGGGAGTGTCAGCTTGACCCTAACATGAAATACAGCCAGCAGACTTGACAGTGTATTTTGTTTTTAGAACTGTTGTTCCTTGCTTTCAGTTCAAAAATCTAGCTTTTTCATCTAAGACTGAATGTAGTAGTGGTTTCTGCTTGCACTATTAGCTTACTATAAAGCTTAAAAAACCAAAACTTACTGCATGGTAGGCAGTCAGCTGTTGCCAGTAAAAAGAGGGGAATAGGAGAAATATTTATCAGTGTGCAAAATATTTAACTAAACGTTTAACTTTCAACATCTGTTAAACATGTTAAAGTTGTATGTAGAGTGCAGGATTTTAATTTTAGTTGAGCTTAAGTTTAATTTTAGCTTAAGTTCTAATTTAAGGTTATTATGTTTGATCTTTAATTATTTGCTGTCGAATGCATATATCTTGAAAATTTTGATGACTTAAGAAGGTGTGTCACTAACACTGTGTTAAGCTTTTGAAGTTCTACAATTCCTGAAACTAGAAGTGTCTGGTAAGATAGTTAAAGCCATTCGAGCTAATTGAGACGTTTTTCCTCTACAG
Seq C2 exon
GTTTGAGTATCTATTTAATTTTGACAATACTTTTGAAATTCATGATGATATAGAAGTACTAAAACGAATGGGAATGGCCTGTGGGCTAGAATCTGGAAGCTGTTCAGCAGAGGACCTAAAAATTGCAAGGAGTTTGGTTCCCAAAGCTTTGGAACCATATGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823:ENSGALT00000027160:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.5=100)
A:
NA
C2:
PF087815=DP=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATTGCCTTCAAGAACCTCGT
R:
CTGTCACATATGGTTCCAAAGCT
Band lengths:
319-1168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]