RnoINT0150096 @ rn6
Intron Retention
Gene
ENSRNOG00000019222 | Tfdp1
Description
transcription factor Dp-1 [Source:RGD Symbol;Acc:1560344]
Coordinates
chr16:81121757-81122432:+
Coord C1 exon
chr16:81121757-81121908
Coord A exon
chr16:81121909-81122265
Coord C2 exon
chr16:81122266-81122432
Length
357 bp
Sequences
Splice sites
5' ss Seq
CAAGTTCGT
5' ss Score
2.69
3' ss Seq
ACAGTGCCTTTCCCCAACAGATT
3' ss Score
9.66
Exon sequences
Seq C1 exon
CAAATTGCCTTCAAGAACTTGGTGCAGAGAAATCGCCAAGCGGAGCAGCAGGCCCGCAGGCCACCGCCTCCCAACTCTGTCATCCACTTGCCCTTCATCATTGTCAACACCAGCAGGAAGACAGTCATCGACTGCAGCATCTCCAATGACAA
Seq A exon
GTTCGTCTTCAGTGGGCCCTCGAAATGTAGCTCCTCGGGGAAAGAAACAGGCATTTGTCATCAGGATTCAGTCTTATGGCTGCTGAGTAACAGCAGTTGTGGTCTCTGGTGGTCCTAGAACATGTACATGTGCAGGTAGCGCTGTGTCCCGGCCCAGGGCCATGCCTAGAGCAAGACAGGTTGTGGAATTATCCAACGTGTCTTTCCTTCCCTGGTGTGAACTGTTGTAGAGGAGTTCAGTTGTAGGCCCTGGACGGGAGGTGTTGGGAGGGGCTGCTGCCTGGTCCCCACCCACAGGACTTACTGCCTGCTCTTGGAAGGAGGCCACATCATCCTCACAGTGCCTTTCCCCAACAG
Seq C2 exon
ATTTGAGTATCTGTTCAACTTTGACAACACGTTTGAAATCCACGATGATATCGAGGTGCTCAAGCGCATGGGCATGGCCTGTGGGCTGGAGTCGGGCAGCTGCTCTGCTGAAGACCTCAAGGTGGCGAGAAGTCTGGTACCAAAAGCTCTAGAACCGTATGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019222:ENSRNOT00000026150:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.5=100)
A:
NA
C2:
PF087815=DP=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTGCCTTCAAGAACTTGGTGC
R:
CTGTCACATACGGTTCTAGAGCT
Band lengths:
318-675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]