HsaINT0166131 @ hg19
Intron Retention
Gene
ENSG00000198176 | TFDP1
Description
transcription factor Dp-1 [Source:HGNC Symbol;Acc:11749]
Coordinates
chr13:114290292-114291015:+
Coord C1 exon
chr13:114290292-114290443
Coord A exon
chr13:114290444-114290848
Coord C2 exon
chr13:114290849-114291015
Length
405 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
ACTGTGCCTTTCCCCTTCAGATT
3' ss Score
12.53
Exon sequences
Seq C1 exon
CAAATTGCCTTCAAGAACCTGGTGCAGAGAAACCGGCATGCGGAGCAGCAGGCCAGCCGGCCACCGCCACCCAACTCAGTCATCCACCTGCCCTTCATCATCGTCAACACCAGCAAGAAGACGGTCATCGACTGCAGCATCTCCAATGACAA
Seq A exon
GTAGGTTGTGGGCGGGGAGCTGTTCCCTGGTCACCCATCTCTTTTTTAGGGAGCCGACCCTGTTGGTATTGTCACTAGGACAAGTTTTAAATGTTGTACAAATAGCAAATGTTGCACAAATTGCTGTCCATTGGGGGGTGGTGGGAGGCTGCCGCCATGTGGCAGATGGAAGGTCTCTGTTCCGGGAGCGTGTGCCTTAGGGCATGTCCTCCTGGGGAGAATAGGCCTCGATTTGCCTCTCATCTCATTTACTTCAGAGTTTATAAATTCTGTGAGGAGACACTGATGACTGGGAACCGGGAAGCTGTGTGTGGCGGTCAGCGGGTCAGCCGTCCTGGCTCCACCCCAGTGTGTACCGTCTCCGCTGGGAGACCCTGTCTTTCTGACTGTGCCTTTCCCCTTCAG
Seq C2 exon
ATTTGAGTATCTGTTTAATTTTGACAACACATTTGAAATCCACGATGACATAGAAGTGCTGAAGCGGATGGGCATGGCTTGCGGGCTGGAGTCGGGGAGCTGCTCTGCCGAAGACCTTAAAATGGCCAGAAGTCTGGTCCCCAAGGCTCTGGAGCCATACGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198176-TFDP1:NR_026580:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.5=100)
A:
NA
C2:
PF087815=DP=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATTGCCTTCAAGAACCTGGTG
R:
CTGTCACGTATGGCTCCAGAG
Band lengths:
319-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)