GgaINT0108944 @ galGal3
Intron Retention
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59629953-59631339:+
Coord C1 exon
chr1:59629953-59630090
Coord A exon
chr1:59630091-59631260
Coord C2 exon
chr1:59631261-59631339
Length
1170 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TTTCTATTATCTAATTATAGCTT
3' ss Score
6.7
Exon sequences
Seq C1 exon
GGTTACACAGATGAGCCTGTGTCCAAGATCTTGTGTCATGTAGAAGATGGGACCATTGTCCAGCTGGACCGATGGAATCTACAAGTTGAGCGCAACCCAGATTTGCCACAGGATGAGCTGGAAGATGGGTCACGTAAG
Seq A exon
GTCAGAGCCTTTTTTTTTCCTAGGGAGACTATGGTATAATTAAGAGCATTTTGGGATACTCCATGAGAGGTGTGAGTGCAGAAGCTCTAAAACCTTTTCAATTTTTTGTTGCATCTTTTCCTATTACTCTTGTGTGCCTCCAGGGGCATGTGAACCCTAATATGTATTGACCATCTTATTTGTTGTTTGTAACTCAGACTTTCAGCATTTGTCTCGATAACCAAAGCCTGGTAAAAACCCATTCCATTTCATTGTTTTCCCTCCAGTTAATCAAGGGTGACAGAAGAAGGAACCCAGTTACGACTATTCATTCCTATATTGGAGACACATCTAAAAACATACAGATATTTTTATATTACTTAGGATCCTGCTGGTGAATGCTAACTGTTCCCTTCTTTACAGTTAAGAGTAGTGTATTTATGGATTTAATGTCTTTGTGTGCAAGTCTCCATATCATCTCCATTAGTGATATAATCTCTCTTGAGAGTTAAAGATTGGAAAAATCTTTGTGAGGGGATCACATTCATATTGATAAGTCATAGGGCTTGGGATGTTGAAAGTGTCACTGACATTTAAAAAAAAAATTACAAAAATTCTATGAACCATTTTCCTCTTGTCAGTTAGAATTTCCAGCTTATTTATTTGATGCTACTGTTTCCTTTGTACAGCTCTGCTGGGCCAGTATAATGATGAAGAGGCCAGATGTGTGCTTTGCTATTTCATGCATCCTCAATAAAATTAGGGCTTCTTGTCTGGGACTTGCATTGCTCCTGGTTATATATTAAGCAAGAAAAACACAGCTTGAGTTTTATTCATCATGCTGAGTTTGAAGTGCCAAGCAATTAGGAAAACCTATATATTGACATGTTAAGTGGAGAAGCGTTCTGAAAAATCTCAATGAGAAAGTAAATGAGAAACCTTGTAATGTGTTTGCAAAGATACTTATATGATTGTAAAGCTCGGTAAATGTGTTTGCATTCTTTGGCTTTTGTATGGAGCATCTCCTACAAGTTATTAGTAGCCTTCTTAGAAGAACAACTTCTTACATGCACGTCCCATTTTCTTTTTAGGTTTTCAGGAGGTGCCAAATTTAAAATAGTTAATTTCTGGTGTGCCATAGAATATTTAATCTGTGCTGCTTTTACATGTCTTTCTATTATCTAATTATAG
Seq C2 exon
CTTCCACTCAATGTCTTCAATAATTACTTCAGCCTTGGGTTTGATGCACATGTTACACTGGAGTTCCACGAATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890:ENSGALT00000021020:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PD(19.2=52.2)
A:
NA
C2:
PF0060914=DAGK_acc=PU(13.9=81.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGAGCCTGTGTCCAAG
R:
CTCTGGATTCGTGGAACTCCA
Band lengths:
211-1381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]