HsaINT0047410 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46394511-46395785:+
Coord C1 exon
chr11:46394511-46394651
Coord A exon
chr11:46394652-46395706
Coord C2 exon
chr11:46395707-46395785
Length
1055 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
GTCCCTTGACCTTTTTCCAGTTG
3' ss Score
7.13
Exon sequences
Seq C1 exon
GGCTACACAGATGAGCCTGTGTCCAAGATCCTCTCCCACGTGGAGGAGGGGAACGTGGTACAGCTGGACCGCTGGGACCTCCACGCTGAGCCCAACCCCGAGGCAGGGCCTGAGGACCGAGATGAAGGCGCCACCGACCGG
Seq A exon
GTAAGTTGGCCAGGGTTGGTGGGGGGCAGGGCAGGTGACTGGGGACTGGATCCCACTTTTCCACTTGCTGGTTCTGGGACCTCGGGCGTGTCTCTTCATTTCTCCAACTTCCACTTCTTCCTTGTACGATGGGAATAATAGTACTTGCCTCACAAGATGCTGTTTTTTCTGTGTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTGAGACTGAGTCTCGCTCTGTTACCCAGGCTGGAGTGCAGTGGCGCAATCCCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGCAGGTGCCACCACACCTGGCTAATTTTTGTTTTTCTGTTTTCTTTTTTTTTTCTTGTTTTTTTTTTTGTTTTTGTTTTTTGTTTTTTGTGACAGAGTCTCACTGTCACCCAGGCTGGAGTACAGTGGCACAGTCTTGGCTCACTGCAACCTCTGCCTCCCGGGCTCAAGCTATTCTCCTCCGTCAGCCTCCTGAGTAGCTGGGACTACAGGCACCCGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTCTCACCATGTTGGTCAGCCTGGTTTTGAACTCCTGACCTCAGGTGATCCATCTGCCTCGGCCTCCCAAAGCACTGGGATTACAGGCATGAGCCACCACGCCTGGTCAGAAGATGCTGCTTTATTCCATAGACATGCACTGAGCGCCTGCTACCTGCCAGGCACTTCTCTAAGCAGTGAGCAAAACCAAGCCTCGCTGTTGTGCTCCACATGGCATGTCAGGAAGAAGTGTTAGGGGAGCTGACAGGGAAGAGATGCTGCAGGCACGCAGGGAAATCCCCCAGGAGCCACCAGGCAGAGCAGGGCTGTGCCTGACAGCGGGTGAGCTGGGCTGAGCCCTAGCGGACGCTGCTGACCAGGAAAAGCCTGTGAACAGATGGGCTGAGCTGGCTCGGCCACACGAGGCCCCTGGAGCGGGGACATTTGTGAGGCCCAGCCCTCATTTTGGTCCCTTGACCTTTTTCCAG
Seq C2 exon
TTGCCCCTGGATGTCTTCAACAACTACTTCAGCCTGGGCTTTGACGCCCACGTCACCCTGGAGTTCCACGAGTCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_003646:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PD(19.2=51.1)
A:
NA
C2:
PF0060914=DAGK_acc=PU(13.9=81.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGAGCCTGTGTCCAAG
R:
CTCGAGACTCGTGGAACTCCA
Band lengths:
214-1269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)