MmuINT0048910 @ mm10
Intron Retention
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91938717-91939464:-
Coord C1 exon
chr2:91939324-91939464
Coord A exon
chr2:91938796-91939323
Coord C2 exon
chr2:91938717-91938795
Length
528 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
ACCCCTTGACATTTTTCTAGCTG
3' ss Score
6.64
Exon sequences
Seq C1 exon
GGTTACACAGATGAGCCTGTGTCAAAGATCCTTTCCCATGTTGAGGAGGGGAATGTGGTACAGCTGGACCGTTGGGACCTCCGAGCAGAGCCCAACCCTGAGGCGGGGCCTGAGGAGCGAGATGATGGAGCCACTGACCGG
Seq A exon
GTAGGTCAACCAGGACGACAGCCAGGTCTGCAAGGGGGTGGTTCATGAGTCAGGGATTCAAGGACCTGGCTGGACTCTACACACCTATCACCCGGTCCTGGGAATGTGGTGAGTTTCTAGTTCTTCACATTCCAGCCTCTTTCTATCCCAGGAGAATGGTACCCACTGAACGCTAGCTTCTTCCTCAGCCTCCCGGCACATGCCTGGTGAGAGTCTCCAGTGTGCCAGGTTCTATCCTAAGCAGTGGCGATACTTAAGTCCCCTGTTCCTGGAGTTGATGCAGTCCATGGCATCTGAGGGCACAGTGCTGTAGGGACCCAGCAGGCCCTCTGAGGAGCTGCTGGCTCCCTTCCCCGCTGCAAGAGCAGGGCCTCCCAAGCAGTGCTGGGGGAACTTTGAAACACTCTTTACTTGACACAAAGGCCTCTACAAGTAGTTTGGCTGAGCAAGGGCAGTGGGTGCTGATATTGGAAAGAGTTGACACATGTGAGACAACTCTGTCATTTCTACCCCTTGACATTTTTCTAG
Seq C2 exon
CTGCCCCTGGATGTCTTTAACAACTACTTCAGCCTGGGCTTCGATGCCCACGTCACCCTGGAATTTCATGAGTCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479:ENSMUST00000099709:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PD(19.2=51.1)
A:
NA
C2:
PF0060914=DAGK_acc=PU(13.9=81.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGAGCCTGTGTCAAAGA
R:
CTCGAGACTCATGAAATTCCAGGG
Band lengths:
214-742
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types