HsaINT1010966 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46372961-46374235:+
Coord C1 exon
chr11:46372961-46373101
Coord A exon
chr11:46373102-46374156
Coord C2 exon
chr11:46374157-46374235
Length
1055 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
GTCCCTTGACCTTTTTCCAGTTG
3' ss Score
7.13
Exon sequences
Seq C1 exon
GGCTACACAGATGAGCCTGTGTCCAAGATCCTCTCCCACGTGGAGGAGGGGAACGTGGTACAGCTGGACCGCTGGGACCTCCACGCTGAGCCCAACCCCGAGGCAGGGCCTGAGGACCGAGATGAAGGCGCCACCGACCGG
Seq A exon
GTAAGTTGGCCAGGGTTGGTGGGGGGCAGGGCAGGTGACTGGGGACTGGATCCCACTTTTCCACTTGCTGGTTCTGGGACCTCGGGCGTGTCTCTTCATTTCTCCAACTTCCACTTCTTCCTTGTACGATGGGAATAATAGTACTTGCCTCACAAGATGCTGTTTTTTCTGTGTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTGAGACTGAGTCTCGCTCTGTTACCCAGGCTGGAGTGCAGTGGCGCAATCCCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGCAGGTGCCACCACACCTGGCTAATTTTTGTTTTTCTGTTTTCTTTTTTTTTTCTTGTTTTTTTTTTTGTTTTTGTTTTTTGTTTTTTGTGACAGAGTCTCACTGTCACCCAGGCTGGAGTACAGTGGCACAGTCTTGGCTCACTGCAACCTCTGCCTCCCGGGCTCAAGCTATTCTCCTCCGTCAGCCTCCTGAGTAGCTGGGACTACAGGCACCCGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTCTCACCATGTTGGTCAGCCTGGTTTTGAACTCCTGACCTCAGGTGATCCATCTGCCTCGGCCTCCCAAAGCACTGGGATTACAGGCATGAGCCACCACGCCTGGTCAGAAGATGCTGCTTTATTCCATAGACATGCACTGAGCGCCTGCTACCTGCCAGGCACTTCTCTAAGCAGTGAGCAAAACCAAGCCTCGCTGTTGTGCTCCACATGGCATGTCAGGAAGAAGTGTTAGGGGAGCTGACAGGGAAGAGATGCTGCAGGCACGCAGGGAAATCCCCCAGGAGCCACCAGGCAGAGCAGGGCTGTGCCTGACAGCGGGTGAGCTGGGCTGAGCCCTAGCGGACGCTGCTGACCAGGAAAAGCCTGTGAACAGATGGGCTGAGCTGGCTCGGCCACACGAGGCCCCTGGAGCGGGGACATTTGTGAGGCCCAGCCCTCATTTTGGTCCCTTGACCTTTTTCCAG
Seq C2 exon
TTGCCCCTGGATGTCTTCAACAACTACTTCAGCCTGGGCTTTGACGCCCACGTCACCCTGGAGTTCCACGAGTCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PD(19.2=51.1)
A:
NA
C2:
PF0060914=DAGK_acc=PU(13.9=81.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGAGCCTGTGTCCAAG
R:
CTCGAGACTCGTGGAACTCCA
Band lengths:
214-1269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains