RnoINT0047096 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80849889-80850638:-
Coord C1 exon
chr3:80850498-80850638
Coord A exon
chr3:80849968-80850497
Coord C2 exon
chr3:80849889-80849967
Length
530 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
ACACCTTGACATTTCTCTAGCTG
3' ss Score
5.72
Exon sequences
Seq C1 exon
GGTTACACAGATGAGCCAGTGTCAAAGATCCTTTCCCATGTAGAGGAGGGGAACGTGGTACAGCTGGACCGTTGGGACCTCCGAGCAGAGCCCAACCCTGAGGCAGGGCCTGAGGAGCGAGATGACGGAGCCACTGACCGG
Seq A exon
GTAGGTCAGCCAAGGACTACGCCAGGTCCACAAGGGGGCGGTTCATGAGTCTGGATTCCCGAGGACCTGGCTGGACTCCACACACCTACTGTTCGGTTCGGAAATATGGCAAGTTTCTAGTCCCTTACCTTCCAGCCTCTTTCTGTCCCAGGAGAATGATACCCACTAAGAGCTGCTTCCTTACGAAGCCTCCTGGCACATACCGGCTGAGGGTCTCCAGTGTACCAGGCTCTGTTCTAAGCGGTGGCAGTACTCGGGCAGTACTTGGTGCAATATGTGGCATCTGGGGACGGAGTGCTACAATGTGAGGACCCAGCAGGGCCTCTGGGGAGCTGCTGTCTCCCTTCCCAGCTGCAGGAGCAGGGCCTCCCAAGCACTGCTGGGGGAAACTTTGAAACACTGTTTACTTGACACAAAGGCCTCTAAGAGTGGTTGGACTGAGCAAGGGCAGTGGGTGCTAATCTTGGCCTTGGAAAGAGTTGACACTTGTGAGTCACCTCTGTCATTTCTACACCTTGACATTTCTCTAG
Seq C2 exon
CTGCCCCTGGATGTCTTCAACAACTACTTCAGTCTGGGCTTTGATGCCCACGTCACCCTGGAGTTTCATGAGTCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PD(19.2=51.1)
A:
NA
C2:
PF0060914=DAGK_acc=PU(13.9=81.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGATGAGCCAGTGTCAA
R:
CGAGACTCATGAAACTCCAGGG
Band lengths:
214-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]